def extract_patterns(self, config):
# extract ReVerb pattern and detect the presence of the passive voice
patterns_bet_tags = Reverb.extract_reverb_patterns_ptb(self.bet_words)
if len(patterns_bet_tags) > 0:
self.passive_voice = self.config.reverb.detect_passive_voice(
patterns_bet_tags)
# forced hack since _'s_ is always tagged as VBZ, (u"'s", 'VBZ') and causes ReVerb to identify
# a pattern which is wrong, if this happens, ignore that a pattern was extracted
if patterns_bet_tags[0][0] == "'s":
self.bet_vector = self.construct_words_vectors(
self.bet_words, config)
else:
self.bet_vector = self.construct_pattern_vector(
patterns_bet_tags, config)
else:
self.bet_vector = self.construct_words_vectors(
self.bet_words, config)
# extract two words before the first entity, and two words after the second entity
if len(self.bef_words) > 0:
self.bef_vector = self.construct_words_vectors(
self.bef_words, config)
if len(self.aft_words) > 0:
self.aft_vector = self.construct_words_vectors(
self.aft_words, config)
def __init__(self):
self.tagger = load('taggers/maxent_treebank_pos_tagger/english.pickle')
self.reverb = Reverb()
self.lmtzr = WordNetLemmatizer()
self.aux_verbs = ['be', 'have']
class FeatureExtractor:
def __init__(self):
self.tagger = load('taggers/maxent_treebank_pos_tagger/english.pickle')
self.reverb = Reverb()
self.lmtzr = WordNetLemmatizer()
self.aux_verbs = ['be', 'have']
@staticmethod
def extract_prepositions(context, shingles):
for token in context:
if token[1].startswith("IN") or token[1].startswith("TO"):
shingles.write(token[0].encode("utf8").strip() + '_PREP ')
def extract_verbs(self, context, shingles, context_tag):
for token in context:
if token[1].startswith("V") and self.lmtzr.lemmatize(token[0], 'v') not in self.aux_verbs:
# VB - Verb, base form
if token[1] == "VB":
shingles.write(token[0].encode("utf8").strip() + '_VB_' + context_tag + ' ')
# VBD Verb, past tense
# VBN Verb, past participle
if token[1] == "VBD":
shingles.write(token[0].encode("utf8").strip() + '_VBD_' + context_tag + ' ')
if token[1] == "VBN":
shingles.write(token[0].encode("utf8").strip() + '_VBN_' + context_tag + ' ')
# VBP Verb, non-3rd person singular present
# VBZ Verb, 3rd person singular present
if token[1] == "VBP":
shingles.write(token[0].encode("utf8").strip() + '_VBP_' + context_tag + ' ')
if token[1] == "VBZ":
shingles.write(token[0].encode("utf8").strip() + '_VBZ_' + context_tag + ' ')
# VBG Verb, gerund or present participle
if token[1] == "VBG":
shingles.write(token[0].encode("utf8").strip() + '_VBG_' + context_tag + ' ')
def extract_features(self, after, before, between, e1_type, e2_type):
shingles = StringIO.StringIO()
# add entities type
shingles.write(e1_type.encode("utf8").strip() + '_ENTITY1 ')
shingles.write(e2_type.encode("utf8").strip() + '_ENTITY2 ')
# relational patterns corresponding to: a verb, followed by nouns, adjectives, or adverbs,
# and ending with a preposition;
reverb_pattern = self.reverb.extract_reverb_patterns_tagged_ptb(between)
if len(reverb_pattern) > 0:
passive_voice = self.reverb.detect_passive_voice(reverb_pattern)
pattern = '_'.join([t[0] for t in reverb_pattern])
if passive_voice is True:
pattern += '_RVB_PASSIVE'
else:
pattern += '_RVB'
shingles.write(pattern.encode("utf8").strip() + ' ')
# normalized version of reverb_patterns
pattern_normalized = ''
for t in reverb_pattern:
if t[1].startswith("V"):
pattern_normalized += self.lmtzr.lemmatize(t[0], 'v') + '_'
else:
pattern_normalized += self.lmtzr.lemmatize(t[0]) + '_'
pattern_normalized += 'RVB_NORM'
shingles.write(pattern_normalized.encode("utf8").strip() + ' ')
# verbs from all contexts, except aux verbs
self.extract_verbs(before, shingles, 'BEF')
self.extract_verbs(between, shingles, 'BET')
self.extract_verbs(after, shingles, 'AFT')
# prepositions from BET context
self.extract_prepositions(between, shingles)
# nouns from the BET context
for t in between:
if t[1] == 'NN':
shingles.write(t[0].encode("utf8").strip()+'_NN_BET' + ' ')
# n-grams of characters from all contexts
bef_grams = self.extract_ngrams_chars(' '.join([token[0] for token in before]), "BEF")
bet_grams = self.extract_ngrams_chars(' '.join([token[0] for token in between]), "BET")
aft_grams = self.extract_ngrams_chars(' '.join([token[0] for token in after]), "AFT")
for shingle in bef_grams, bet_grams, aft_grams:
shingles.write(shingle.encode("utf8").strip() + ' ')
return shingles
def process_index(self, sentence, e1, e2):
sentence_no_tags = re.sub(regex_clean_simple, "", sentence)
text_tokens = word_tokenize(sentence_no_tags)
text_tagged = self.tagger.tag(text_tokens)
assert len(text_tagged) == len(text_tokens)
# extract entities types
e1_type = re.search(r'<[A-Z]+>'+e1+'</[A-Z]+>', sentence).group(0)
e2_type = re.search(r'<[A-Z]+>'+e2+'</[A-Z]+>', sentence).group(0)
e1_type = e1_type[1:4]
e2_type = e2_type[1:4]
e1_info = find_locations(e1, text_tokens)
e2_info = find_locations(e2, text_tokens)
for e1_b in e1_info[1]:
for e2_b in e2_info[1]:
distance = abs(e2_b - e1_b)
if distance > MAX_TOKENS or distance < MIN_TOKENS:
continue
else:
before = text_tagged[:e1_b]
before = before[-CONTEXT_WINDOW:]
between = text_tagged[e1_b+len(e1_info[0]):e2_b]
after = text_tagged[e2_b+len(e2_info[0]):]
after = after[:CONTEXT_WINDOW]
return self.extract_features(after, before, between, e1_type, e2_type)
def process_classify(self, line):
sentence_no_tags = re.sub(regex_clean_simple, "", line)
text_tokens = word_tokenize(sentence_no_tags)
text_tagged = self.tagger.tag(text_tokens)
assert len(text_tagged) == len(text_tokens)
sentence = Sentence(line.strip(), MAX_TOKENS, MIN_TOKENS, CONTEXT_WINDOW, self.tagger)
relationships = []
for rel in sentence.relationships:
shingles = self.extract_features(rel.after, rel.before, rel.between, rel.e1_type, rel.e2_type)
relationships.append((rel, shingles))
return relationships
@staticmethod
def extract_ngrams_chars(text, context):
tmp = StringIO.StringIO()
chrs = ['_' if c == ' ' else c for c in text]
for g in ngrams(chrs, N_GRAMS_SIZE):
tmp.write(''.join(g) + '_' + context + ' ')
return tmp.getvalue()
@staticmethod
def extract_bigrams(text):
tokens = word_tokenize(text)
return [gram[0]+' '+gram[1] for gram in bigrams(tokens)]
def __init__(self):
self.tagger = load('taggers/maxent_treebank_pos_tagger/english.pickle')
self.reverb = Reverb()
self.lmtzr = WordNetLemmatizer()
self.aux_verbs = ['be', 'have']
class FeatureExtractor:
def __init__(self):
self.tagger = load('taggers/maxent_treebank_pos_tagger/english.pickle')
self.reverb = Reverb()
self.lmtzr = WordNetLemmatizer()
self.aux_verbs = ['be', 'have']
@staticmethod
def extract_prepositions(context, shingles):
for token in context:
if token[1].startswith("IN") or token[1].startswith("TO"):
shingles.write(token[0].encode("utf8").strip() + '_PREP ')
def extract_verbs(self, context, shingles, context_tag):
for token in context:
if token[1].startswith("V") and self.lmtzr.lemmatize(
token[0], 'v') not in self.aux_verbs:
# VB - Verb, base form
if token[1] == "VB":
shingles.write(token[0].encode("utf8").strip() + '_VB_' +
context_tag + ' ')
# VBD Verb, past tense
# VBN Verb, past participle
if token[1] == "VBD":
shingles.write(token[0].encode("utf8").strip() + '_VBD_' +
context_tag + ' ')
if token[1] == "VBN":
shingles.write(token[0].encode("utf8").strip() + '_VBN_' +
context_tag + ' ')
# VBP Verb, non-3rd person singular present
# VBZ Verb, 3rd person singular present
if token[1] == "VBP":
shingles.write(token[0].encode("utf8").strip() + '_VBP_' +
context_tag + ' ')
if token[1] == "VBZ":
shingles.write(token[0].encode("utf8").strip() + '_VBZ_' +
context_tag + ' ')
# VBG Verb, gerund or present participle
if token[1] == "VBG":
shingles.write(token[0].encode("utf8").strip() + '_VBG_' +
context_tag + ' ')
def extract_features(self, after, before, between, e1_type, e2_type):
shingles = StringIO.StringIO()
# add entities type
shingles.write(e1_type.encode("utf8").strip() + '_ENTITY1 ')
shingles.write(e2_type.encode("utf8").strip() + '_ENTITY2 ')
# relational patterns corresponding to: a verb, followed by nouns, adjectives, or adverbs,
# and ending with a preposition;
reverb_pattern = self.reverb.extract_reverb_patterns_tagged_ptb(
between)
if len(reverb_pattern) > 0:
passive_voice = self.reverb.detect_passive_voice(reverb_pattern)
pattern = '_'.join([t[0] for t in reverb_pattern])
if passive_voice is True:
pattern += '_RVB_PASSIVE'
else:
pattern += '_RVB'
shingles.write(pattern.encode("utf8").strip() + ' ')
# normalized version of reverb_patterns
pattern_normalized = ''
for t in reverb_pattern:
if t[1].startswith("V"):
pattern_normalized += self.lmtzr.lemmatize(t[0], 'v') + '_'
else:
pattern_normalized += self.lmtzr.lemmatize(t[0]) + '_'
pattern_normalized += 'RVB_NORM'
shingles.write(pattern_normalized.encode("utf8").strip() + ' ')
# verbs from all contexts, except aux verbs
self.extract_verbs(before, shingles, 'BEF')
self.extract_verbs(between, shingles, 'BET')
self.extract_verbs(after, shingles, 'AFT')
# prepositions from BET context
self.extract_prepositions(between, shingles)
# nouns from the BET context
for t in between:
if t[1] == 'NN':
shingles.write(t[0].encode("utf8").strip() + '_NN_BET' + ' ')
# n-grams of characters from all contexts
bef_grams = self.extract_ngrams_chars(
' '.join([token[0] for token in before]), "BEF")
bet_grams = self.extract_ngrams_chars(
' '.join([token[0] for token in between]), "BET")
aft_grams = self.extract_ngrams_chars(
' '.join([token[0] for token in after]), "AFT")
for shingle in bef_grams, bet_grams, aft_grams:
shingles.write(shingle.encode("utf8").strip() + ' ')
return shingles
def process_index(self, sentence, e1, e2):
sentence_no_tags = re.sub(regex_clean_simple, "", sentence)
text_tokens = word_tokenize(sentence_no_tags)
text_tagged = self.tagger.tag(text_tokens)
assert len(text_tagged) == len(text_tokens)
# extract entities types
e1_type = re.search(r'<[A-Z]+>' + e1 + '</[A-Z]+>', sentence).group(0)
e2_type = re.search(r'<[A-Z]+>' + e2 + '</[A-Z]+>', sentence).group(0)
e1_type = e1_type[1:4]
e2_type = e2_type[1:4]
e1_info = find_locations(e1, text_tokens)
e2_info = find_locations(e2, text_tokens)
for e1_b in e1_info[1]:
for e2_b in e2_info[1]:
distance = abs(e2_b - e1_b)
if distance > MAX_TOKENS or distance < MIN_TOKENS:
continue
else:
before = text_tagged[:e1_b]
before = before[-CONTEXT_WINDOW:]
between = text_tagged[e1_b + len(e1_info[0]):e2_b]
after = text_tagged[e2_b + len(e2_info[0]):]
after = after[:CONTEXT_WINDOW]
return self.extract_features(after, before, between,
e1_type, e2_type)
def process_classify(self, line):
sentence_no_tags = re.sub(regex_clean_simple, "", line)
text_tokens = word_tokenize(sentence_no_tags)
text_tagged = self.tagger.tag(text_tokens)
assert len(text_tagged) == len(text_tokens)
sentence = Sentence(line.strip(), MAX_TOKENS, MIN_TOKENS,
CONTEXT_WINDOW, self.tagger)
relationships = []
for rel in sentence.relationships:
shingles = self.extract_features(rel.after, rel.before,
rel.between, rel.e1_type,
rel.e2_type)
relationships.append((rel, shingles))
return relationships
@staticmethod
def extract_ngrams_chars(text, context):
tmp = StringIO.StringIO()
chrs = ['_' if c == ' ' else c for c in text]
for g in ngrams(chrs, N_GRAMS_SIZE):
tmp.write(''.join(g) + '_' + context + ' ')
return tmp.getvalue()
@staticmethod
def extract_bigrams(text):
tokens = word_tokenize(text)
return [gram[0] + ' ' + gram[1] for gram in bigrams(tokens)]
def __init__(self, config_file, seeds_file, negative_seeds, sentences_file,
similarity, confidance):
self.seed_tuples = set()
self.negative_seed_tuples = set()
self.e1_type = None
self.e2_type = None
self.stopwords = stopwords.words('english')
self.threshold_similarity = similarity
self.instance_confidance = confidance
self.reverb = Reverb()
for line in fileinput.input(config_file):
if line.startswith("#") or len(line) == 1:
continue
if line.startswith("wUpdt"):
self.wUpdt = float(line.split("=")[1])
if line.startswith("wUnk"):
self.wUnk = float(line.split("=")[1])
if line.startswith("wNeg"):
self.wNeg = float(line.split("=")[1])
if line.startswith("number_iterations"):
self.number_iterations = int(line.split("=")[1])
if line.startswith("use_RlogF"):
self.use_RlogF = bool(line.split("=")[1])
if line.startswith("min_pattern_support"):
self.min_pattern_support = int(line.split("=")[1])
if line.startswith("max_tokens_away"):
self.max_tokens_away = int(line.split("=")[1])
if line.startswith("min_tokens_away"):
self.min_tokens_away = int(line.split("=")[1])
if line.startswith("context_window_size"):
self.context_window_size = int(line.split("=")[1])
if line.startswith("use_reverb"):
self.use_reverb = line.split("=")[1].strip()
if line.startswith("alpha"):
self.alpha = float(line.split("=")[1])
if line.startswith("beta"):
self.beta = float(line.split("=")[1])
if line.startswith("gamma"):
self.gamma = float(line.split("=")[1])
assert self.alpha + self.beta + self.gamma == 1
self.read_seeds(seeds_file)
self.read_negative_seeds(negative_seeds)
fileinput.close()
print "\nConfiguration parameters"
print "========================"
print "Relationship Representation"
print "e1 type :", self.e1_type
print "e2 type :", self.e2_type
print "context window :", self.context_window_size
print "max tokens away :", self.max_tokens_away
print "min tokens away :", self.min_tokens_away
print "use ReVerb :", self.use_reverb
print "\nVectors"
print "alpha :", self.alpha
print "beta :", self.beta
print "gamma :", self.gamma
print "\nSeeds:"
print "positive seeds :", len(self.seed_tuples)
print "negative seeds :", len(self.negative_seed_tuples)
print "negative seeds wNeg :", self.wNeg
print "unknown seeds wUnk :", self.wUnk
print "\nParameters and Thresholds"
print "threshold_similarity :", self.threshold_similarity
print "instance confidence :", self.instance_confidance
print "min_pattern_support :", self.min_pattern_support
print "iterations :", self.number_iterations
print "iteration wUpdt :", self.wUpdt
print "\n"
try:
os.path.isfile("vsm.pkl")
f = open("vsm.pkl", "r")
print "\nLoading tf-idf model from disk..."
self.vsm = cPickle.load(f)
f.close()
except IOError:
print "\nGenerating tf-idf model from sentences..."
self.vsm = VectorSpaceModel(sentences_file, self.stopwords)
print "\nWriting generated model to disk..."
f = open("vsm.pkl", "wb")
cPickle.dump(self.vsm, f)
f.close()