def gene(cs, argument):
GENE_FOLDER = "./SEQUENCES/"
print_colored("GENE", "green")
seq = Seq()
response = seq.read_fasta(GENE_FOLDER + argument + ".txt")
print(response)
cs.send(str(response).encode())
from Seq02 import Seq
print('-----| Practice 1, Exercise 9 |------')
FOLDER = "../SEQUENCES/"
file_name = FOLDER + "U5.txt"
s0 = Seq('')
s0 = s0.read_fasta(file_name)
print(f"Sequence : (Length: {s0.len()}) {s0}")
print(f"Bases: {s0.count()}")
print(f"Rev: {s0.reverse(s0)}")
print(f"Comp: {s0.complement(s0)}")
from client0 import Client
from pathlib import Path
from Seq02 import Seq
PRACTICE = 2
EXERCISE = 6
print(f"-----| Practice {PRACTICE}, Exercise {EXERCISE} |------")
# -- Parameters of the server to talk to
IP = "192.168.1.12"
PORT = 12000
# -- Create a client object
c = Client(IP, PORT)
s = Seq()
s.read_fasta("FRAT1.txt")
count = 0
for i in range(0, len(s.strbases), 10):
fragment = s.strbases[i:i + 10]
print(fragment)
count = count + 1
if count == 5:
break
print("Fragment", count, ":", fragment)
print(c.talk(fragment))
from Seq02 import Seq
print('-----| Practice 1, Exercise 10 |------')
bases = ["A", "C", "T", "G"]
list_of_genes = ["U5", "ADA", "FRAT1", "FXN", "RNU6_269P" ]
txt = ".txt"
FOLDER = "../SEQUENCES/"
for e in list_of_genes:
s0 = Seq('')
val = 0
base = ''
s0 = s0.read_fasta(FOLDER+e+txt)
dict1 = s0.count()
for i, t in dict1.items():
while t > val:
val = t
base = i
print("Gene ", e, " : Most frequent base: ", base)
from client0 import Client
from pathlib import Path
from Seq02 import Seq
PRACTICE = 2
EXERCISE = 1
print(f"-----| Practice {2}, Exercise {7} |------")
IP = "192.168.1.12"
PORT = 12000
PORT_2 = 12002
c = Client(IP, PORT)
c_2 = Client(IP, PORT_2)
s = Seq()
s.read_fasta('../P0/FRAT1.txt')
i = 0
count = 0
while i < len(s.strbases) and count < 10:
fragment = s.strbases[i:i + 10]
count += 1
i += 10
fragment_text = "Fragment " + str(count) + ": " + fragment
print(fragment_text)
if count % 2 == 0:
print(c_2.debug_talk(fragment_text))
else:
print(c.debug_talk(fragment_text))