def __init__(self, master):
dm = DnaManager()
rm = RnaManager()
pm = ProteinManager()
ps = ProteinSystem(dm, rm, pm)
tk.Frame.__init__(self, master)
tk.Label(self,
text="Input DNA sequence without any spaces").pack(side="top",
pady=20)
entry = tk.Entry(self, width=50)
entry.pack()
label = ttk.Label(self, text="")
label.pack()
convert = tk.Button(
self,
text="Convert",
command=lambda: [
label.config(text=ps.get_mrna(entry.get()), wraplengt=500),
copied.config(text="")
])
convert.pack()
copy = tk.Button(self,
text="Copy",
command=lambda: [
master.copy_to_clipboard(label.cget("text")),
copied.config(text="Copied to Clipboard")
])
copy.pack()
tk.Button(self,
text="Return to main page",
command=lambda: master.frame_switch(MainPage)).pack()
copied = tk.Label(self, text="")
copied.pack(pady=10)
def __init__(self, master):
label_font = tk.font.Font(family="Courier New", size=8)
dm = DnaManager()
rm = RnaManager()
pm = ProteinManager()
ps = ProteinSystem(dm, rm, pm)
tk.Frame.__init__(self, master)
tk.Label(self, text="Input 1st protein sequence without any"
" spaces").pack(side="top", pady=10)
entry1 = tk.Entry(self, width=50)
entry1.pack()
tk.Label(self, text="Input 2nd protein sequence without any "
"spaces").pack(side="top", pady=10)
entry2 = tk.Entry(self, width=50)
entry2.pack()
label = ttk.Label(self, text="")
label.pack(anchor='w')
label.config(font=label_font)
align = tk.Button(self,
text="Align",
command=lambda: [
label.config(text=ps.compare_protein(
entry1.get(), entry2.get()),
wraplengt=500)
])
align.pack()
tk.Button(self,
text="Return to main page",
command=lambda: master.frame_switch(MainPage)).pack()
class ProteinSystem:
_dm: DnaManager()
_rm: RnaManager()
_pm: ProteinManager()
def __init__(self, dm, rm, pm):
self._dm = dm
self._rm = rm
self._pm = pm
def dna_pairing(self, sequence) -> str:
"""Acts in the Controller method in Clean Architecture to find
complementary DNA pair of a given DNA sequence.
:param sequence: DNA sequence input
:return Complementary DNA sequence"""
return self._dm.find_dna_pair(sequence)
def get_mrna(self, sequence) -> str:
"""Acts in the Controller method in Clean Architecture to find
complementary RNA pair of a given DNA sequence.
:param sequence: DNA sequence input
:return Complementary RNA sequence"""
return self._dm.dna_to_rna_(sequence)
def get_protein(self, sequence) -> str:
"""Acts in the Controller method in Clean Architecture to find
the protein chain of a given RNA sequence.
:param sequence: RNA sequence input
:return matching protein chain"""
sequence = sequence.upper()
if self._dm.dna_to_rna_(sequence) != Presenter.print_invalid():
mrna = self._dm.dna_to_rna_(sequence)
return self._rm.rna_to_protein(mrna)
return Presenter.print_invalid()
def get_dna(self, sequence) -> str:
"""Acts in the Controller method in Clean Architecture to find
complementary DNA pair of a given RNA sequence.
:param sequence: RNA sequence input
:return Complementary DNA sequence"""
return self._rm.rna_to_dna_pair(sequence)
def compare_dna(self, seq1, seq2) -> str:
if len(seq1) > 70 or len(seq2) > 70:
return Presenter.print_sequence_max()
if not self._dm.valid_dna_seq(seq1):
return Presenter.print_invalid_seq1()
if not self._dm.valid_dna_seq(seq2):
return Presenter.print_invalid_seq2()
return seq1.upper() + '\n' + align_helper(seq1,
seq2) + '\n' + seq2.upper()
def compare_rna(self, seq1, seq2) -> str:
if len(seq1) > 70 or len(seq2) > 70:
return Presenter.print_sequence_max()
if not self._rm.valid_rna_seq(seq1):
return Presenter.print_invalid_seq1()
if not self._rm.valid_rna_seq(seq2):
return Presenter.print_invalid_seq2()
return seq1.upper() + '\n' + align_helper(seq1,
seq2) + '\n' + seq2.upper()
def compare_protein(self, seq1, seq2) -> str:
if len(seq1) > 70 or len(seq2) > 70:
return Presenter.print_sequence_max()
if not self._pm.valid_protein_sequence(seq1):
return Presenter.print_invalid_seq1()
if not self._pm.valid_protein_sequence(seq2):
return Presenter.print_invalid_seq2()
return seq1.upper() + '\n' + align_helper(seq1,
seq2) + '\n' + seq2.upper()