def determineGeneListCombos(self):
feature_names = self.inputs.features.get(ArgumentProcessingService.FEATURE_NAMES)
if self.inputs.analysisType() is AnalysisType.NO_GENE_LISTS:
return [[feature_names]]
gene_lists = self.inputs.gene_lists
static_features = self.inputs.static_features
combos, expected_length = GeneListComboUtility.determineCombos(gene_lists, feature_names, static_features)
if len(combos) != expected_length:
self.log.warning("Unexpected number of combos detected, should be %s but instead created %s.\n%s",
expected_length, len(combos), combos)
return combos
def determineGeneListCombos(self, processed_arguments):
gene_lists = processed_arguments.gene_lists
feature_names = processed_arguments.features.get(
ArgumentProcessingService.FEATURE_NAMES)
static_features = processed_arguments.static_features
combos, expected_length = GeneListComboUtility.determineCombos(
gene_lists, feature_names, static_features)
if len(combos) != expected_length:
self.log.warning(
"Unexpected number of combos detected, should be %s but instead created %s.\n%s",
expected_length, len(combos), combos)
return combos