def __init__(self, m, sp_num):
'''takes in a sbml and validates it'''
self.m = m
self.py_dot_graph = pydot.Dot(type='digraph', graph_name='graphName', \
rankdir = "LR")
self.add_edge = self.py_dot_graph.add_edge
self.add_node = self.py_dot_graph.add_node
DotNodes.__init__(self, m)
self.sp_num = sp_num
self.sp_id = self.m.getSpecies(sp_num - 1).getId()
def __init__(self, m):
'''
m is a libsbml getModel file
initialise a few short-cuts here
'''
self.m = m
self.py_dot_graph = pydot.Dot(type='digraph', graph_name='graphName', \
rankdir = "LR")
self.add_edge = self.py_dot_graph.add_edge
self.add_node = self.py_dot_graph.add_node
DotNodes.__init__(self, m)
def __init__(self, m, sp_num): '''takes in a sbml and validates it''' self.m = m self.py_dot_graph = pydot.Dot(type='digraph', graph_name='graphName', \ rankdir = "LR") self.add_edge = self.py_dot_graph.add_edge self.add_node = self.py_dot_graph.add_node DotNodes.__init__(self, m) self.sp_num = sp_num self.sp_id = self.m.getSpecies(sp_num-1).getId()
def __init__(self, m): ''' m is a libsbml getModel file initialise a few short-cuts here ''' self.m = m self.py_dot_graph = pydot.Dot(type='digraph', graph_name='graphName', \ rankdir = "LR") self.add_edge = self.py_dot_graph.add_edge self.add_node = self.py_dot_graph.add_node DotNodes.__init__(self, m)
def __init__(self, m, re_num):
'''
m is libsbml.getModel
re_num is the reaction to be visualised
'''
self.m = m
self.py_dot_graph = pydot.Dot(type='digraph', graph_name='graphName', \
rankdir = "LR")
self.add_edge = self.py_dot_graph.add_edge
self.add_node = self.py_dot_graph.add_node
DotNodes.__init__(self, m)
self.re_num = re_num
self.re = self.m.getReaction(re_num - 1)
DotNodes.__init__(self, m)
def __init__(self, m, re_num): ''' m is libsbml.getModel re_num is the reaction to be visualised ''' self.m = m self.py_dot_graph = pydot.Dot(type='digraph', graph_name='graphName', \ rankdir = "LR") self.add_edge = self.py_dot_graph.add_edge self.add_node = self.py_dot_graph.add_node DotNodes.__init__(self, m) self.re_num = re_num self.re = self.m.getReaction(re_num-1) DotNodes.__init__(self, m)
