def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.on = 0
self.renew = 1
self.distanceWidget = vtk.vtkDistanceWidget()
self.obsTag = self.distanceWidget.AddObserver("EndInteractionEvent", self.onPlacePoint)
self.representation = vtkbxd.vtkDistanceRepresentationScaled2D()
self.representation.SetScaleX(1.0)
self.representation.SetScaleZ(1.0)
self.distanceWidget.SetRepresentation(self.representation)
self.renderer = self.parent.getRenderer()
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.distanceWidget.SetInteractor(iactor)
self.picker = vtk.vtkCellPicker()
self.currentPlane = None
#self.picker.SetTolerance(0.05)
#self.updateRendering()
self.filterDesc = "Measure distance in 3D view"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {"TrackFile": "Tracks file", #"AllTracks": "Show all tracks", \
"MinLength": "Min. length of track (# of timepoints)",
"SphereRadius": "Sphere radius",
"TubeRadius": "Tube radius",
"SameStartingPoint": "Visualize tracks starting from same point"}
self.showTracks = []
self.lineMapper = vtk.vtkPolyDataMapper()
self.sphereMapper = vtk.vtkPolyDataMapper()
self.firstMapper = vtk.vtkPolyDataMapper()
self.lastMapper = vtk.vtkPolyDataMapper()
self.currentMapper = vtk.vtkPolyDataMapper()
self.actors = []
self.renderer = self.parent.getRenderer()
#iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
lib.messenger.connect(None, "visualize_tracks", self.onVisualizeTracks)
self.filterDesc = "Visualize created motion tracks"
def __init__(self, parent, visualizer, **kws):
"""
Method: __init__(parent)
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.on = 0
self.renew = 1
self.mapper = vtk.vtkPolyDataMapper()
self.eventDesc = "Rendering Camera Path"
self.spline = spline = vtk.vtkSplineWidget()
self.spline.GetLineProperty().SetColor(1, 0, 0)
self.spline.GetHandleProperty().SetColor(0, 1, 0)
self.spline.SetResolution(1000)
#TODO: endInteraction is in GUI.Urmas.SplineEditor
self.spline.AddObserver("EndInteractionEvent", self.endInteraction)
self.spline.AddObserver("InteractionEvent", self.endInteraction)
#TODO: iren is in GUI.Urmas.SplineEditor
self.spline.SetInteractor(self.iren)
#self.spline.On()
#self.spline.SetEnabled(1)
self.renderer = self.parent.getRenderer()
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
#self.name = "Clipping Plane"
self.parent = parent
self.on = 0
self.renew = 1
self.currentPlane = None
self.clipped = 0
self.clippedModules = []
self.planeWidget = vtk.vtkPlaneWidget()
self.planeWidget.AddObserver("InteractionEvent", self.clipVolumeRendering)
self.planeWidget.SetResolution(20)
self.planeWidget.SetRepresentationToOutline()
self.planeWidget.NormalToXAxisOn()
self.renderer = self.parent.getRenderer()
self.plane = vtk.vtkPlane()
iactor = parent.wxrenwin.GetRenderWindow().GetInteractor()
self.planeWidget.SetInteractor(iactor)
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {"ShowControl": "Show controls",
"AllModules": "Clip all modules",
"ClippedModule": "Module to clip"}
self.filterDesc = "Clip rendering using a plane"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
#self.name = "Scale bar"
self.renew = 1
self.mapper = vtk.vtkDataSetMapper()
self.actor = vtk.vtkActor()
self.actor.SetMapper(self.mapper)
self.width = 10
self.widthPx = 100
self.voxelSize = (1, 1, 1)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.actor)
self.polyLine = vtk.vtkPolyLine()
#self.mapper.SetInput(self.polyLine.GetOutput())
self.actor.GetProperty().SetColor(1, 1, 1)
self.textActor = vtk.vtkTextActor()
#self.textActor.ScaledTextOn()
self.renderer.AddActor2D(self.textActor)
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
style = iactor.GetInteractorStyle()
# style.AddObserver("StartInteractionEvent",self.updateLine)
style.AddObserver("EndInteractionEvent", self.updateRendering)
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
#self.name = "Scale bar"
self.renew = 1
self.mapper = vtk.vtkDataSetMapper()
self.actor = vtk.vtkActor()
self.actor.SetMapper(self.mapper)
self.width = 10
self.widthPx = 100
self.voxelSize = (1, 1, 1)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.actor)
self.polyLine = vtk.vtkPolyLine()
#self.mapper.SetInput(self.polyLine.GetOutput())
self.actor.GetProperty().SetColor(1, 1, 1)
self.textActor = vtk.vtkTextActor()
#self.textActor.ScaledTextOn()
self.renderer.AddActor2D(self.textActor)
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
style = iactor.GetInteractorStyle()
# style.AddObserver("StartInteractionEvent",self.updateLine)
style.AddObserver("EndInteractionEvent", self.updateRendering)
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
#self.name = "Clipping Plane"
self.parent = parent
self.on = 0
self.renew = 1
self.currentPlane = None
self.clipped = 0
self.clippedModules = []
self.planeWidget = vtk.vtkPlaneWidget()
self.planeWidget.AddObserver("InteractionEvent",
self.clipVolumeRendering)
self.planeWidget.SetResolution(20)
self.planeWidget.SetRepresentationToOutline()
self.planeWidget.NormalToXAxisOn()
self.renderer = self.parent.getRenderer()
self.plane = vtk.vtkPlane()
iactor = parent.wxrenwin.GetRenderWindow().GetInteractor()
self.planeWidget.SetInteractor(iactor)
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {
"ShowControl": "Show controls",
"AllModules": "Clip all modules",
"ClippedModule": "Module to clip"
}
self.filterDesc = "Clip rendering using a plane"
def __init__(self, parent, visualizer, **kws):
"""
Method: __init__(parent)
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.on = 0
self.renew = 1
self.mapper = vtk.vtkPolyDataMapper()
self.eventDesc = "Rendering Camera Path"
self.spline = spline = vtk.vtkSplineWidget()
self.spline.GetLineProperty().SetColor(1, 0, 0)
self.spline.GetHandleProperty().SetColor(0, 1, 0)
self.spline.SetResolution(1000)
#TODO: endInteraction is in GUI.Urmas.SplineEditor
self.spline.AddObserver("EndInteractionEvent", self.endInteraction)
self.spline.AddObserver("InteractionEvent", self.endInteraction)
#TODO: iren is in GUI.Urmas.SplineEditor
self.spline.SetInteractor(self.iren)
#self.spline.On()
#self.spline.SetEnabled(1)
self.renderer = self.parent.getRenderer()
def __init__(self, parent, visualizer, **kws):
"""
Method: __init__(parent)
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
#self.name = "Arbitrary Slices"
self.on = 0
self.renew = 1
self.mapper = vtk.vtkPolyDataMapper()
self.outline = vtk.vtkOutlineFilter()
self.outlineMapper = vtk.vtkPolyDataMapper()
self.outlineActor = vtk.vtkActor()
self.outlineActor.SetMapper(self.outlineMapper)
self.picker = vtk.vtkCellPicker()
self.picker.SetTolerance(0.5)
self.planes = []
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.outlineActor)
self.ctf = None
self.origin = None
self.spacing = None
self.extent = None
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.on = 0
self.renew = 1
self.mapper = vtk.vtkPolyDataMapper()
self.eventDesc = "Rendering orthogonal slices"
self.outline = vtk.vtkOutlineFilter()
self.outlineMapper = vtk.vtkPolyDataMapper()
self.outlineActor = vtk.vtkActor()
self.outlineActor.SetMapper(self.outlineMapper)
self.picker = vtk.vtkCellPicker()
self.picker.SetTolerance(0.005)
self.planeWidgetX = vtk.vtkImagePlaneWidget()
self.planeWidgetX.DisplayTextOn()
self.planeWidgetX.SetPicker(self.picker)
self.planeWidgetX.SetKeyPressActivationValue("x")
#self.planeWidgetX.UserControlledLookupTableOn()
self.prop1 = self.planeWidgetX.GetPlaneProperty()
#self.prop1.SetColor(1, 0, 0)
self.planeWidgetX.SetResliceInterpolateToCubic()
self.planeWidgetY = vtk.vtkImagePlaneWidget()
self.planeWidgetY.DisplayTextOn()
self.planeWidgetY.SetPicker(self.picker)
self.planeWidgetY.SetKeyPressActivationValue("y")
self.prop2 = self.planeWidgetY.GetPlaneProperty()
self.planeWidgetY.SetResliceInterpolateToCubic()
#self.planeWidgetY.UserControlledLookupTableOn()
#self.prop2.SetColor(1, 1, 0)
# for the z-slice, turn off texture interpolation:
# interpolation is now nearest neighbour, to demonstrate
# cross-hair cursor snapping to pixel centers
self.planeWidgetZ = vtk.vtkImagePlaneWidget()
self.planeWidgetZ.DisplayTextOn()
self.planeWidgetZ.SetPicker(self.picker)
self.planeWidgetZ.SetKeyPressActivationValue("z")
self.prop3 = self.planeWidgetZ.GetPlaneProperty()
#self.prop3.SetColor(1, 0, 1)
#self.planeWidgetZ.UserControlledLookupTableOn()
self.planeWidgetZ.SetResliceInterpolateToCubic()
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.outlineActor)
self.useOutline = 1
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.planeWidgetX.SetInteractor(iactor)
self.planeWidgetY.SetInteractor(iactor)
self.planeWidgetZ.SetInteractor(iactor)
lib.messenger.connect(None, "zslice_changed", self.setZ)
self.filterDesc = "View orthogonal slices"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.on = 0
self.renew = 1
self.mapper = vtk.vtkPolyDataMapper()
self.eventDesc = "Rendering orthogonal slices"
self.outline = vtk.vtkOutlineFilter()
self.outlineMapper = vtk.vtkPolyDataMapper()
self.outlineActor = vtk.vtkActor()
self.outlineActor.SetMapper(self.outlineMapper)
self.picker = vtk.vtkCellPicker()
self.picker.SetTolerance(0.005)
self.planeWidgetX = vtk.vtkImagePlaneWidget()
self.planeWidgetX.DisplayTextOn()
self.planeWidgetX.SetPicker(self.picker)
self.planeWidgetX.SetKeyPressActivationValue("x")
#self.planeWidgetX.UserControlledLookupTableOn()
self.prop1 = self.planeWidgetX.GetPlaneProperty()
#self.prop1.SetColor(1, 0, 0)
self.planeWidgetX.SetResliceInterpolateToCubic()
self.planeWidgetY = vtk.vtkImagePlaneWidget()
self.planeWidgetY.DisplayTextOn()
self.planeWidgetY.SetPicker(self.picker)
self.planeWidgetY.SetKeyPressActivationValue("y")
self.prop2 = self.planeWidgetY.GetPlaneProperty()
self.planeWidgetY.SetResliceInterpolateToCubic()
#self.planeWidgetY.UserControlledLookupTableOn()
#self.prop2.SetColor(1, 1, 0)
# for the z-slice, turn off texture interpolation:
# interpolation is now nearest neighbour, to demonstrate
# cross-hair cursor snapping to pixel centers
self.planeWidgetZ = vtk.vtkImagePlaneWidget()
self.planeWidgetZ.DisplayTextOn()
self.planeWidgetZ.SetPicker(self.picker)
self.planeWidgetZ.SetKeyPressActivationValue("z")
self.prop3 = self.planeWidgetZ.GetPlaneProperty()
#self.prop3.SetColor(1, 0, 1)
#self.planeWidgetZ.UserControlledLookupTableOn()
self.planeWidgetZ.SetResliceInterpolateToCubic()
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.outlineActor)
self.useOutline = 1
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.planeWidgetX.SetInteractor(iactor)
self.planeWidgetY.SetInteractor(iactor)
self.planeWidgetZ.SetInteractor(iactor)
lib.messenger.connect(None, "zslice_changed", self.setZ)
self.filterDesc = "View orthogonal slices"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.init = False
VisualizationModule.__init__(self, parent, visualizer, numberOfInputs=(2, 2), **kws)
# self.name = "Surface Rendering"
self.normals = vtk.vtkPolyDataNormals()
self.smooth = None
self.volumeModule = None
self.scalarRange = (0, 255)
for i in range(1, 3):
self.setInputChannel(i, i)
self.eventDesc = "Rendering iso-surface"
self.decimate = vtk.vtkDecimatePro()
self.mapper = vtk.vtkPolyDataMapper()
self.mapper2 = vtk.vtkPolyDataMapper()
self.contour = vtk.vtkMarchingCubes()
self.contour2 = vtk.vtkDiscreteMarchingCubes()
self.descs = {
"Normals": "Smooth surface with normals",
"FeatureAngle": "Feature angle of normals\n",
"Simplify": "Simplify surface",
"PreserveTopology": "Preserve topology",
"Transparency": "Surface transparency",
"Distance": "Distance to consider inside",
"MarkColor": "Mark in/outside objects with colors",
}
self.actor = self.lodActor = vtk.vtkLODActor()
self.lodActor.SetMapper(self.mapper)
self.lodActor.SetNumberOfCloudPoints(10000)
self.actor2 = vtk.vtkLODActor()
self.actor2.SetMapper(self.mapper2)
self.actor2.SetNumberOfCloudPoints(10000)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.lodActor)
self.renderer.AddActor(self.actor2)
lib.messenger.connect(None, "highlight_object", self.onHighlightObject)
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
self.renew = 1
self.mapper = vtk.vtkPolyDataMapper()
self.axes = None
VisualizationModule.__init__(self, parent, visualizer, **kws)
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.descs = {"X": "X axis", "Y": "Y axis", "Z": "Z axis"}
self.axes = axes = vtk.vtkAxesActor()
axes.SetShaftTypeToCylinder()
axes.SetXAxisLabelText("X")
axes.SetYAxisLabelText("Y")
axes.SetZAxisLabelText("Z")
axes.SetTotalLength(2.0, 2.0, 2.0)
self.length = math.sqrt(2.0**2 + 2.0**2 + 2.0**2)
tprop = vtk.vtkTextProperty()
tprop.ItalicOn()
tprop.ShadowOn()
tprop.SetFontFamilyToTimes()
axes.GetXAxisCaptionActor2D().SetCaptionTextProperty(tprop)
tprop2 = vtk.vtkTextProperty()
tprop2.ShallowCopy(tprop)
axes.GetYAxisCaptionActor2D().SetCaptionTextProperty(tprop2)
tprop3 = vtk.vtkTextProperty()
tprop3.ShallowCopy(tprop)
axes.GetZAxisCaptionActor2D().SetCaptionTextProperty(tprop3)
self.renderer = self.parent.getRenderer()
self.actor = self.axes
self.marker = vtk.vtkOrientationMarkerWidget()
self.marker.SetOutlineColor(0.93, 0.57, 0.13)
self.marker.SetOrientationMarker(axes)
self.marker.SetViewport(0.0, 0.0, 0.2, 0.2)
self.marker.SetInteractor(iactor)
self.marker.SetEnabled(1)
self.marker.InteractiveOff()
self.filterDesc = "Add axes in 3D view"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
VisualizationModule.__init__(self, parent, visualizer, **kws)
# self.name = "Surface Rendering"
# for i in range(1, 3):
# self.setInputChannel(i, i)
self.normals = vtk.vtkPolyDataNormals()
self.smooth = None
self.volumeModule = None
self.scalarRange = (0, 255)
self.eventDesc = "Rendering iso-surface"
self.decimate = vtk.vtkDecimatePro()
self.setMethod(1)
self.init = 0
self.mapper = vtk.vtkPolyDataMapper()
self.descs = {
"Method": "Surface rendering method",
"Gaussian": "Smooth surface with gaussian smoothing",
"Normals": "Smooth surface with normals",
"FeatureAngle": "Feature angle of normals\n",
"Simplify": "Simplify surface",
"PreserveTopology": "Preserve topology",
"IsoValue": "Iso value",
"SurfaceRangeBegin": "Generate surfaces in range:\n",
"SurfaceAmnt": "Number of surfaces",
"Transparency": "Surface transparency",
"MultipleSurfaces": "Visualize multiple surfaces",
"SolidColor": "Color surface with max. intensity",
}
self.actor = self.lodActor = vtk.vtkLODActor()
self.lodActor.SetMapper(self.mapper)
self.lodActor.SetNumberOfCloudPoints(10000)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.lodActor)
# self.updateRendering()
self.filterDesc = "Create and visualize iso-surface"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.init = False
VisualizationModule.__init__(self, parent, visualizer, numberOfInputs = (2,2), **kws)
#self.name = "Surface Rendering"
self.normals = vtk.vtkPolyDataNormals()
self.smooth = None
self.volumeModule = None
self.scalarRange = (0, 255)
for i in range(1, 3):
self.setInputChannel(i, i)
self.eventDesc = "Rendering iso-surface"
self.decimate = vtk.vtkDecimatePro()
self.mapper = vtk.vtkPolyDataMapper()
self.mapper2 = vtk.vtkPolyDataMapper()
self.contour = vtk.vtkMarchingCubes()
self.contour2 = vtk.vtkDiscreteMarchingCubes()
self.descs = {
"Normals": "Smooth surface with normals", "FeatureAngle": "Feature angle of normals\n",
"Simplify": "Simplify surface", "PreserveTopology": "Preserve topology",
"Transparency": "Surface transparency","Distance":"Distance to consider inside",
"MarkColor":"Mark in/outside objects with colors"
}
self.actor = self.lodActor = vtk.vtkLODActor()
self.lodActor.SetMapper(self.mapper)
self.lodActor.SetNumberOfCloudPoints(10000)
self.actor2 = vtk.vtkLODActor()
self.actor2.SetMapper(self.mapper2)
self.actor2.SetNumberOfCloudPoints(10000)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.lodActor)
self.renderer.AddActor(self.actor2)
lib.messenger.connect(None, "highlight_object", self.onHighlightObject)
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
VisualizationModule.__init__(self, parent, visualizer, **kws)
#self.name = "Surface Rendering"
#for i in range(1, 3):
# self.setInputChannel(i, i)
self.normals = vtk.vtkPolyDataNormals()
self.smooth = None
self.volumeModule = None
self.scalarRange = (0, 255)
self.eventDesc = "Rendering iso-surface"
self.decimate = vtk.vtkDecimatePro()
self.setMethod(1)
self.init = 0
self.mapper = vtk.vtkPolyDataMapper()
self.descs = {
"Method": "Surface rendering method",
"Gaussian": "Smooth surface with gaussian smoothing",
"Normals": "Smooth surface with normals",
"FeatureAngle": "Feature angle of normals\n",
"Simplify": "Simplify surface",
"PreserveTopology": "Preserve topology",
"IsoValue": "Iso value",
"SurfaceRangeBegin": "Generate surfaces in range:\n",
"SurfaceAmnt": "Number of surfaces",
"Transparency": "Surface transparency",
"MultipleSurfaces": "Visualize multiple surfaces",
"SolidColor": "Color surface with max. intensity"
}
self.actor = self.lodActor = vtk.vtkLODActor()
self.lodActor.SetMapper(self.mapper)
self.lodActor.SetNumberOfCloudPoints(10000)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.lodActor)
#self.updateRendering()
self.filterDesc = "Create and visualize iso-surface"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.x, self.y, self.z = -1, -1, -1
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.on = 0
self.renew = 1
self.angleWidget = vtk.vtkAngleWidget()
self.obsTag = self.angleWidget.AddObserver("EndInteractionEvent", self.onPlacePoint)
self.angleWidget.CreateDefaultRepresentation()
self.representation = self.angleWidget.GetRepresentation()
self.renderer = self.parent.getRenderer()
iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.angleWidget.SetInteractor(iactor)
self.picker = vtk.vtkCellPicker()
#self.picker.SetTolerance(0.05)
self.filterDesc = "Measure angle in 3D view"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {
"Normals": "Smooth surface with normals",
"FeatureAngle": "Feature angle of normals",
"Slice": "Select slice to be warped",
"Scale": "Scale factor for warping"
}
self.luminance = vtk.vtkImageLuminance()
#DataGeometry filter, image to polygons
self.geometry = vtk.vtkImageDataGeometryFilter()
self.colorMapper = None
#warp scalars!
self.warp = vtk.vtkWarpScalar()
self.warp.SetScaleFactor(-0.1)
#merge image and new warped data
self.merge = vtk.vtkMergeFilter()
self.normals = vtk.vtkPolyDataNormals()
self.normals.SetFeatureAngle(90)
#first the mapper
self.mapper = vtk.vtkPolyDataMapper()
#make the actor from the mapper
self.actor = vtk.vtkActor()
self.actor.SetMapper(self.mapper)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.actor)
# iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.filterDesc = "Visualize 2D slice as 3D map"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.boxWidget = None
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {
"ShowControls": "Show controls",
"ClippedModule": "Module to clip",
"AllModules": "Clip all modules",
"InsideOut": "Clip from outside"
}
boxWidget = self.boxWidget = vtk.vtkBoxWidget()
self.cut = 0
self.clippedMappers = []
self.renderer = self.parent.getRenderer()
iactor = parent.wxrenwin.GetRenderWindow().GetInteractor()
self.boxWidget.SetInteractor(iactor)
self.boxWidget.SetPlaceFactor(1.0)
outlineProperty = boxWidget.GetOutlineProperty()
outlineProperty.SetRepresentationToWireframe()
outlineProperty.SetAmbient(1.0)
outlineProperty.SetAmbientColor(1, 1, 1)
outlineProperty.SetLineWidth(3)
selectedOutlineProperty = boxWidget.GetSelectedOutlineProperty()
selectedOutlineProperty.SetRepresentationToWireframe()
selectedOutlineProperty.SetAmbient(1.0)
selectedOutlineProperty.SetAmbientColor(1, 0, 0)
selectedOutlineProperty.SetLineWidth(3)
# iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
boxWidget.AddObserver("InteractionEvent", self.clipVolumeRender)
self.renew = 0
self.filterDesc = "Clip rendering using a box"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.boxWidget = None
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {"ShowControls": "Show controls",
"ClippedModule": "Module to clip",
"AllModules": "Clip all modules",
"InsideOut": "Clip from outside"}
boxWidget = self.boxWidget = vtk.vtkBoxWidget()
self.cut = 0
self.clippedMappers = []
self.renderer = self.parent.getRenderer()
iactor = parent.wxrenwin.GetRenderWindow().GetInteractor()
self.boxWidget.SetInteractor(iactor)
self.boxWidget.SetPlaceFactor(1.0)
outlineProperty = boxWidget.GetOutlineProperty()
outlineProperty.SetRepresentationToWireframe()
outlineProperty.SetAmbient(1.0)
outlineProperty.SetAmbientColor(1, 1, 1)
outlineProperty.SetLineWidth(3)
selectedOutlineProperty = boxWidget.GetSelectedOutlineProperty()
selectedOutlineProperty.SetRepresentationToWireframe()
selectedOutlineProperty.SetAmbient(1.0)
selectedOutlineProperty.SetAmbientColor(1, 0, 0)
selectedOutlineProperty.SetLineWidth(3)
# iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
boxWidget.AddObserver("InteractionEvent", self.clipVolumeRender)
self.renew = 0
self.filterDesc = "Clip rendering using a box"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {"Normals": "Smooth surface with normals", "FeatureAngle": "Feature angle of normals",
"Slice": "Select slice to be warped", "Scale": "Scale factor for warping"}
self.luminance = vtk.vtkImageLuminance()
#DataGeometry filter, image to polygons
self.geometry = vtk.vtkImageDataGeometryFilter()
self.colorMapper = None
#warp scalars!
self.warp = vtk.vtkWarpScalar()
self.warp.SetScaleFactor(-0.1)
#merge image and new warped data
self.merge = vtk.vtkMergeFilter()
self.normals = vtk.vtkPolyDataNormals()
self.normals.SetFeatureAngle (90)
#first the mapper
self.mapper = vtk.vtkPolyDataMapper()
#make the actor from the mapper
self.actor = vtk.vtkActor()
self.actor.SetMapper(self.mapper)
self.renderer = self.parent.getRenderer()
self.renderer.AddActor(self.actor)
# iactor = self.wxrenwin.GetRenderWindow().GetInteractor()
self.filterDesc = "Visualize 2D slice as 3D map"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.modes = [
"Ray casting", "Texture mapping", "3D texture mapping",
"Maximum intensity projection"
]
self.haveVolpro = 0
self.mapper = None
conf = Configuration.getConfiguration()
self.defaultMode = conf.getConfigItem("DefaultVolumeMode", "Rendering")
if self.defaultMode != None:
self.defaultMode = int(self.defaultMode)
else:
self.defaultMode = RAYCAST
try:
volpro = vtk.vtkVolumeProMapper()
self.haveVolpro = 0
if volpro.GetNumberOfBoards():
self.haveVolpro = 1
except:
self.haveVolpro = 0
if self.haveVolpro:
self.modes.append("Minimum intensity projection")
self.colorTransferFunction = None
self.otf, self.otf2 = vtk.vtkPiecewiseFunction(
), vtk.vtkPiecewiseFunction()
otf2 = self.otf2
otf = self.otf
otf2.AddPoint(0, 0.0)
otf2.AddPoint(255, 1.0)
otf.AddPoint(0, 0.0)
otf.AddPoint(255, 0.2)
self.otfs = [self.otf, self.otf, self.otf, self.otf2, self.otf]
self.volumeProperty = vtk.vtkVolumeProperty()
self.volume = vtk.vtkVolume()
self.actor = self.volume
self.volume.SetProperty(self.volumeProperty)
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.mapper = None
#self.name = "Volume Rendering"
self.setParameter("Quality", 10)
self.parameters["Method"] = RAYCAST
if self.defaultMode != None:
self.parameters["Method"] = int(self.defaultMode)
self.volumeProperty.SetScalarOpacity(
self.otfs[self.parameters["Method"]])
self.descs = {"Palette": "", "Method": "", "Interpolation": "Interpolation", \
"NearestNeighbor": "Nearest Neighbour", "Linear": "Linear", \
"Quality": "", "QualityValue": "Maximum number of planes:", \
"UseVolumepro": "Use VolumePro acceleration", \
"UseShading": "Use shading" }
self.eventDesc = "Rendering volume"
self.qualityRange = 0, 10
self.volumeAdded = False
self.mapperUpdated = False
self.setShading(0)
self.vtkObjects = ["otf", "otf2"]
#self.updateRendering()
lib.messenger.connect(None, "switch_datasets", self.onSwitchDatasets)
self.filterDesc = "Volume render input data"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.modes = ["Ray casting", "Texture mapping", "3D texture mapping", "Maximum intensity projection"]
self.haveVolpro = 0
self.mapper = None
conf = Configuration.getConfiguration()
self.defaultMode = conf.getConfigItem("DefaultVolumeMode", "Rendering")
if self.defaultMode != None:
self.defaultMode = int(self.defaultMode)
else:
self.defaultMode = RAYCAST
try:
volpro = vtk.vtkVolumeProMapper()
self.haveVolpro = 0
if volpro.GetNumberOfBoards():
self.haveVolpro = 1
except:
self.haveVolpro = 0
if self.haveVolpro:
self.modes.append("Minimum intensity projection")
self.colorTransferFunction = None
self.otf, self.otf2 = vtk.vtkPiecewiseFunction(), vtk.vtkPiecewiseFunction()
otf2 = self.otf2
otf = self.otf
otf2.AddPoint(0, 0.0)
otf2.AddPoint(255, 1.0)
otf.AddPoint(0, 0.0)
otf.AddPoint(255, 0.2)
self.otfs = [self.otf, self.otf, self.otf, self.otf2, self.otf]
self.volumeProperty = vtk.vtkVolumeProperty()
self.volume = vtk.vtkVolume()
self.actor = self.volume
self.volume.SetProperty(self.volumeProperty)
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.mapper = None
#self.name = "Volume Rendering"
self.setParameter("Quality", 10)
self.parameters["Method"] = RAYCAST
if self.defaultMode != None:
self.parameters["Method"] = int(self.defaultMode)
self.volumeProperty.SetScalarOpacity(self.otfs[self.parameters["Method"]])
self.descs = {"Palette": "", "Method": "", "Interpolation": "Interpolation", \
"NearestNeighbor": "Nearest Neighbour", "Linear": "Linear", \
"Quality": "", "QualityValue": "Maximum number of planes:", \
"UseVolumepro": "Use VolumePro acceleration", \
"UseShading": "Use shading" }
self.eventDesc = "Rendering volume"
self.qualityRange = 0, 10
self.volumeAdded = False
self.mapperUpdated = False
self.setShading(0)
self.vtkObjects = ["otf", "otf2"]
#self.updateRendering()
lib.messenger.connect(None, "switch_datasets", self.onSwitchDatasets)
self.filterDesc = "Volume render input data"
def __init__(self, parent, visualizer, **kws):
"""
Initialization
"""
self.actorsInitialized = False
VisualizationModule.__init__(self, parent, visualizer, **kws)
self.descs = {"FileName": "PDB file",
"SphereRadius": "Sphere radius",
"TubeRadius": "Tube radius"}
self.enabled = 1
self.mapper = vtk.vtkPolyDataMapper()
self.mapper.UseLookupTableScalarRangeOff()
self.mapper.SetScalarVisibility(1)
self.mapper.SetScalarModeToDefault()
#make the actor from the mapper
self.actor = vtk.vtkLODActor()
self.actor.GetProperty().SetRepresentationToSurface()
self.actor.GetProperty().SetInterpolationToGouraud()
self.actor.GetProperty().SetColor(1,1,1)
self.actor.GetProperty().SetAmbient(0.15)
self.actor.GetProperty().SetDiffuse(0.85)
self.actor.GetProperty().SetSpecular(0.1)
self.actor.GetProperty().SetSpecularPower(100)
self.actor.GetProperty().SetSpecularColor(1,1,1)
self.actor.GetProperty().SetColor(1,1,1)
self.actor.SetNumberOfCloudPoints(30000)
self.actor.SetMapper(self.mapper)
self.reader = vtk.vtkPDBReader()
self.renderer = self.parent.getRenderer()
self.tubeFilter = vtk.vtkTubeFilter()
self.tubeFilter.SetNumberOfSides(8)
self.tubeFilter.SetCapping(0)
self.tubeFilter.SetRadius(0.2)
self.tubeFilter.SetVaryRadius(0)
self.tubeFilter.SetRadiusFactor(10)
self.mapper2 = vtk.vtkPolyDataMapper()
self.mapper2.UseLookupTableScalarRangeOff()
self.mapper2.SetScalarVisibility(1)
self.mapper2.SetScalarModeToDefault()
self.tubeActor = vtk.vtkLODActor()
self.tubeActor.SetMapper(self.mapper2)
self.tubeActor.GetProperty().SetRepresentationToSurface()
self.tubeActor.GetProperty().SetInterpolationToGouraud()
self.tubeActor.GetProperty().SetColor(1,1,1)
self.tubeActor.GetProperty().SetAmbient(0.15)
self.tubeActor.GetProperty().SetDiffuse(0.85)
self.tubeActor.GetProperty().SetSpecular(0.1)
self.tubeActor.GetProperty().SetSpecularPower(100)
self.tubeActor.GetProperty().SetSpecularColor(1,1,1)
self.tubeActor.SetNumberOfCloudPoints(30000)
self.sphereSource = vtk.vtkSphereSource()
self.sphereSource.SetCenter(0,0,0)
self.sphereSource.SetRadius(1)
self.sphereSource.SetThetaResolution(8)
self.sphereSource.SetStartTheta(0)
self.sphereSource.SetEndTheta(360)
self.sphereSource.SetPhiResolution(8)
self.sphereSource.SetStartPhi(0)
self.sphereSource.SetEndPhi(180)
self.glyph3D = vtk.vtkGlyph3D()
self.glyph3D.SetOrient(1)
self.glyph3D.SetColorMode(1)
self.glyph3D.SetScaleMode(2)
self.glyph3D.SetScaleFactor(.25)
self.glyph3D.SetSource(self.sphereSource.GetOutput())
self.filterDesc = "Visualize Protein Data Bank file"