def doSuccessSaxsAngle(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginBioSaxsAzimutIntv1_0.doSuccessSaxsAngle")
self.retrieveSuccessMessages(_edPlugin, "EDPluginBioSaxsAzimutIntv1_0.doSuccessSaxsAngle")
self.xsdResult.setIntegratedImage(self.dataInput.getIntegratedImage())
self.strProcessLog += "Conversion to spec-like file of '%s'\n" % (self.integratedImage)
xsdiAsciiExport = XSDataInputBioSaxsAsciiExportv1_0()
xsdiAsciiExport.setIntegratedImage(self.dataInput.getIntegratedImage())
xsdiAsciiExport.setIntegratedCurve(self.dataInput.getIntegratedCurve())
self.__edPluginAsciiExport.setDataInput(xsdiAsciiExport)
def XMLerr(strXMLin):
"""
This is an example of XMLerr function ... it prints only the name of the file created
@param srXMLin: The XML string used to launch the job
@type strXMLin: python string with the input XML
@rtype: None
@return: None
"""
xsd = XSDataInputBioSaxsAsciiExportv1_0.parseString(strXMLin)
EDVerbose.WARNING("Error in the processing of :%s" % xsd.integratedImage.path.value)
def doSuccessSaxsAngle(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginBioSaxsAzimutIntv1_1.doSuccessSaxsAngle")
self.retrieveSuccessMessages(_edPlugin, "EDPluginBioSaxsAzimutIntv1_1.doSuccessSaxsAngle")
self.xsdResult.setIntegratedImage(self.dataInput.getIntegratedImage())
self.lstProcessLog.append("Conversion to spec-like file of '%s'" % (self.integratedImage))
xsdiAsciiExport = XSDataInputBioSaxsAsciiExportv1_0()
xsdiAsciiExport.setIntegratedImage(self.dataInput.getIntegratedImage())
xsdiAsciiExport.setIntegratedCurve(self.dataInput.getIntegratedCurve())
xsdiAsciiExport.sample = self.sample
xsdiAsciiExport.experimentSetup = self.experimentSetup
self.__edPluginAsciiExport.setDataInput(xsdiAsciiExport)
def doSuccessSetMetadata(self, _edPlugin=None):
EDVerbose.DEBUG("EDPluginBioSaxsAveragev1_0.doSuccessSetMetadata")
self.retrieveSuccessMessages(
_edPlugin, "EDPluginBioSaxsAveragev1_0.doSuccessSetMetadata")
self.xsdResult.setAveragedImage(self.dataInput.getAveragedImage())
self.strProcessLog += "Conversion to 3-column ascii file: '%s'\n" % (
self.averagedCurve)
xsdiAsciiExport = XSDataInputBioSaxsAsciiExportv1_0()
xsdiAsciiExport.setIntegratedImage(self.dataInput.getAveragedImage())
xsdiAsciiExport.setIntegratedCurve(self.dataInput.getAveragedCurve())
self.__edPluginAsciiExport.setDataInput(xsdiAsciiExport)
self.__edPluginAsciiExport.connectSUCCESS(self.doSuccessAsciiExport)
self.__edPluginAsciiExport.connectFAILURE(self.doFailureAsciiExport)
self.__edPluginAsciiExport.executeSynchronous()
def testCheckParameters(self):
xsDataInput = XSDataInputBioSaxsAsciiExportv1_0()
# xsDataInput.setNormalizedImage(XSDataImage())
# xsDataInput.setNormalizedImageSize(XSDataInteger())
xsDataInput.setIntegratedImage(XSDataImage())
xsDataInput.setIntegratedCurve(XSDataFile())
# xsDataInput.setNormalizationFactor(XSDataDouble())
# xsDataInput.setMaskFile(XSDataImage())
# xsDataInput.setCorrectedImage(XSDataImage())
# xsDataInput.setConcentration(XSDataDouble())
# xsDataInput.setComments(XSDataString())
# xsDataInput.setCode(XSDataString())
edPluginExec = self.createPlugin()
edPluginExec.setDataInput(xsDataInput)
edPluginExec.checkParameters()
def fileName2xml(filename):
"""Here we create the XML string to be passed to the EDNA plugin from the input filename
This can / should be modified by the final user
@param filename: full path of the input file
@type filename: python string representing the path
@rtype: XML string
@return: python string
"""
if not filename.endswith(".edf"):
return
xsd = XSDataInputBioSaxsAsciiExportv1_0()
xsd.integratedImage = XSDataImage(XSDataString(filename))
xsd.integratedCurve = XSDataFile(XSDataString(os.path.splitext(filename)[0] + ".dat"))
return xsd.marshal()