def functionXMLout(_strXMLin, _strXMLout):
"""
This is an example of XMLout function ... it prints only the name of the file created
@param _srXMLin: The XML string used to launch the job
@type _strXMLin: python string with the input XML
@param _strXMLout: The XML string retrieved job
@type _strXMLout: python string with the output XML
@return: None
"""
xsDataInputGridScreening = XSDataInputGridScreening.parseString(_strXMLin)
strImagePath = xsDataInputGridScreening.getImageFile().getPath().getValue()
EDVerbose.screen("Successful processing of image %s" % strImagePath)
strResultText = "%40s " % os.path.basename(strImagePath)
xsDataResultGridScreening = XSDataResultGridScreening.parseString(_strXMLout)
fileNameParameters = xsDataResultGridScreening.getFileNameParameters()
if fileNameParameters is None:
strResultText += "%6s%10s%10s%6s" % ("NA", "NA", "NA","NA")
else:
strResultText += "%6s%10s%10s%6s" % (
fileNameParameters.getScanId1().getValue(),
fileNameParameters.getMotorPosition1().getValue(),
fileNameParameters.getMotorPosition2().getValue(),
fileNameParameters.getScanId2().getValue(),
)
imageQualityIndicators = xsDataResultGridScreening.getImageQualityIndicators()
if imageQualityIndicators is None:
strResultText += "%6s%6s%6s%6s%10s" % ("NA", "NA", "NA","NA", "NA")
else:
strMethod1Res = "%6s" % "NA"
if imageQualityIndicators.getMethod1Res():
strMethod1Res = "%6.1f" % imageQualityIndicators.getMethod1Res().getValue()
strMethod2Res = "%6s" % "NA"
if imageQualityIndicators.getMethod2Res():
strMethod2Res = "%6.1f" % imageQualityIndicators.getMethod2Res().getValue()
strSpotTotal = "%6s" % "NA"
if imageQualityIndicators.getSpotTotal():
strSpotTotal = "%6d" % imageQualityIndicators.getSpotTotal().getValue()
strGoodBraggCandidates = "%6s" % "NA"
if imageQualityIndicators.getGoodBraggCandidates():
strGoodBraggCandidates = "%6d" % imageQualityIndicators.getGoodBraggCandidates().getValue()
strTotalIntegratedSignal = "%10s" % "NA"
if imageQualityIndicators.getTotalIntegratedSignal():
strTotalIntegratedSignal = "%10.0f" % imageQualityIndicators.getTotalIntegratedSignal().getValue()
strResultText += strMethod1Res + strMethod2Res + strSpotTotal + strGoodBraggCandidates + strTotalIntegratedSignal
if xsDataResultGridScreening.getMosaicity() is None:
strResultText += "%6s" % "NA"
else:
strResultText += "%6.1f" % xsDataResultGridScreening.getMosaicity().getValue()
if xsDataResultGridScreening.getRankingResolution() is None:
strResultText += "%6s" % "NA"
else:
strResultText += "%6.1f" % xsDataResultGridScreening.getRankingResolution().getValue()
strResultText += " " + xsDataResultGridScreening.getComment().getValue()
writeToResultFile(strResultText)
def functionXMLerror(_strXMLin):
"""
@param _strXMLin: The XML string used to launch the job
@type _strXMLin: python string with the input XML
@return: None
"""
xsDataInputGridScreening = XSDataInputGridScreening.parseString(_strXMLin)
strImagePath = xsDataInputGridScreening.getImagePath()[0].getPath().getValue()
strResultText = os.path.dirname(strImagePath) + " " + os.path.basename(strImagePath) + " "
strResultText = strResultText + "Processing failed."
writeToResultFile(strResultText)
return None
def functionXMLerror(_strXMLin):
"""
@param _strXMLin: The XML string used to launch the job
@type _strXMLin: python string with the input XML
@return: None
"""
xsDataInputGridScreening = XSDataInputGridScreening.parseString(_strXMLin)
strImagePath = xsDataInputGridScreening.getImagePath()[0].getPath().getValue()
strResultText = os.path.dirname(strImagePath) + " " + os.path.basename(strImagePath) + " "
strResultText = strResultText + "Processing failed."
writeToResultFile(strResultText)
return None
def testCheckParameters(self):
strXMLInput = self.readAndParseFile(self.strPathToReferenceInput)
xsDataInput = XSDataInputGridScreening.parseString(strXMLInput)
edPluginExecCharacterisation = self.createPlugin()
edPluginExecCharacterisation.setDataInput(xsDataInput)
edPluginExecCharacterisation.checkParameters()
def testCheckParameters(self):
strXMLInput = self.readAndParseFile(self.strPathToReferenceInput)
xsDataInput = XSDataInputGridScreening.parseString(strXMLInput)
edPluginExecCharacterisation = self.createPlugin()
edPluginExecCharacterisation.setDataInput(xsDataInput)
edPluginExecCharacterisation.checkParameters()
