def testRasterConfiguration(self):
strPathToTestConfigFile = os.path.join(self.strUnitTestDataHome,
"XSConfiguration_raster.xml")
edConfiguration = EDConfiguration(strPathToTestConfigFile)
dictItem = edConfiguration.get(self.getPluginName())
xsDataMOSFLMInput = XSDataMOSFLMInput()
xsDataMOSFLMBeam = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeam.setX(XSDataLength(1.0))
xsDataMOSFLMBeam.setY(XSDataLength(2.0))
xsDataMOSFLMInput.setBeam(xsDataMOSFLMBeam)
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
xsDataMOSFLMInput.setDetector(xsDataMOSFLMDetector)
xsDataMOSFLMInput.setDirectory(XSDataString("/tmp"))
xsDataMOSFLMInput.setTemplate(XSDataString("testdata_1_###.img"))
xsDataMOSFLMInput.setWavelength(XSDataWavelength(1.1111))
xsDataMOSFLMInput.setDistance(XSDataLength(222.22))
edPluginMOSFLMv10 = self.createPlugin()
edPluginMOSFLMv10.setScriptExecutable("cat")
edPluginMOSFLMv10.setConfig(dictItem, _bLocal=True)
edPluginMOSFLMv10.configure()
edPluginMOSFLMv10.setXSDataInputClass(XSDataMOSFLMInput)
edPluginMOSFLMv10.setDataInput(xsDataMOSFLMInput)
edPluginMOSFLMv10.generateMOSFLMCommands()
edListCommands = edPluginMOSFLMv10.getListCommandExecution()
edListCommandsReference = [
'WAVELENGTH 1.1111', 'DISTANCE 222.22', 'BEAM 1.0 2.0',
'DETECTOR ADSC', 'DIRECTORY /tmp', 'TEMPLATE testdata_1_###.img',
'RASTER 15 15 3 3 3'
]
EDAssert.equal(edListCommandsReference, edListCommands,
"MOSFLM commands with ratser configured")
def generateDataMOSFLMInputGeneratePrediction(self):
"""
"""
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(XSDataLength(102.5))
xsDataMOSFLMBeamPosition.setY(XSDataLength(104.7))
from XSDataMOSFLMv10 import XSDataMOSFLMDetector
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
from XSDataMOSFLMv10 import XSDataMOSFLMImage
xsDataMOSFLMImage1 = XSDataMOSFLMImage()
xsDataMOSFLMImage1.setNumber(XSDataInteger(1))
xsDataMOSFLMImage1.setRotationAxisStart(XSDataAngle(0.0))
xsDataMOSFLMImage1.setRotationAxisEnd(XSDataAngle(1.0))
from XSDataMOSFLMv10 import XSDataMOSFLMInputGeneratePrediction
xsDataMOSFLMInputGeneratePrediction = XSDataMOSFLMInputGeneratePrediction(
)
xsDataMOSFLMInputGeneratePrediction.setDistance(XSDataLength(198.4))
xsDataMOSFLMInputGeneratePrediction.setWavelength(
XSDataWavelength(0.9340))
xsDataMOSFLMInputGeneratePrediction.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputGeneratePrediction.setDetector(xsDataMOSFLMDetector)
xsDataMOSFLMInputGeneratePrediction.setDirectory(
XSDataString(self.strDataImagePath))
xsDataMOSFLMInputGeneratePrediction.setTemplate(
XSDataString("ref-testscale_1_###.img"))
xsDataMOSFLMInputGeneratePrediction.setImage(xsDataMOSFLMImage1)
return xsDataMOSFLMInputGeneratePrediction
def testGenerateMOSFLMCommands(self):
xsDataMOSFLMInput = XSDataMOSFLMInput()
xsDataMOSFLMBeam = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeam.setX(XSDataLength(1.0))
xsDataMOSFLMBeam.setY(XSDataLength(2.0))
xsDataMOSFLMInput.setBeam(xsDataMOSFLMBeam)
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
xsDataMOSFLMInput.setDetector(xsDataMOSFLMDetector)
xsDataMOSFLMInput.setDirectory(XSDataString("/tmp"))
xsDataMOSFLMInput.setTemplate(XSDataString("testdata_1_###.img"))
xsDataMOSFLMInput.setWavelength(XSDataWavelength(1.1111))
xsDataMOSFLMInput.setDistance(XSDataLength(222.22))
edPluginMOSFLMv10 = self.createPlugin()
edPluginMOSFLMv10.setScriptExecutable("cat")
edPluginMOSFLMv10.configure()
edPluginMOSFLMv10.setXSDataInputClass(XSDataMOSFLMInput)
edPluginMOSFLMv10.setDataInput(xsDataMOSFLMInput)
edPluginMOSFLMv10.generateMOSFLMCommands()
edListCommands = edPluginMOSFLMv10.getListCommandExecution()
edListCommandsReference = [
'WAVELENGTH 1.1111', 'DISTANCE 222.22', 'BEAM 1.0 2.0',
'DETECTOR ADSC', 'DIRECTORY /tmp', 'TEMPLATE testdata_1_###.img'
]
EDAssert.equal(edListCommandsReference, edListCommands,
"MOSFLM commands")
self.cleanUp(edPluginMOSFLMv10)
def generateDataMOSFLMInputGeneratePrediction(self):
"""
"""
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(XSDataLength(102.5))
xsDataMOSFLMBeamPosition.setY(XSDataLength(104.7))
from XSDataMOSFLMv10 import XSDataMOSFLMDetector
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
from XSDataMOSFLMv10 import XSDataMOSFLMImage
xsDataMOSFLMImage1 = XSDataMOSFLMImage()
xsDataMOSFLMImage1.setNumber(XSDataInteger(1))
xsDataMOSFLMImage1.setRotationAxisStart(XSDataAngle(0.0))
xsDataMOSFLMImage1.setRotationAxisEnd(XSDataAngle(1.0))
from XSDataMOSFLMv10 import XSDataMOSFLMInputGeneratePrediction
xsDataMOSFLMInputGeneratePrediction = XSDataMOSFLMInputGeneratePrediction()
xsDataMOSFLMInputGeneratePrediction.setDistance(XSDataLength(198.4))
xsDataMOSFLMInputGeneratePrediction.setWavelength(XSDataWavelength(0.9340))
xsDataMOSFLMInputGeneratePrediction.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputGeneratePrediction.setDetector(xsDataMOSFLMDetector)
xsDataMOSFLMInputGeneratePrediction.setDirectory(XSDataString(self.strDataImagePath))
xsDataMOSFLMInputGeneratePrediction.setTemplate(XSDataString("ref-testscale_1_###.img"))
xsDataMOSFLMInputGeneratePrediction.setImage(xsDataMOSFLMImage1)
return xsDataMOSFLMInputGeneratePrediction
def testRasterConfiguration(self):
strPathToTestConfigFile = os.path.join(self.strUnitTestDataHome, "XSConfiguration_raster.xml")
edConfiguration = EDConfiguration(strPathToTestConfigFile)
edConfiguration.load()
xsPluginItem = edConfiguration.getPluginItem("EDPluginMOSFLMv10")
xsDataMOSFLMInput = XSDataMOSFLMInput()
xsDataMOSFLMBeam = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeam.setX(XSDataLength(1.0))
xsDataMOSFLMBeam.setY(XSDataLength(2.0))
xsDataMOSFLMInput.setBeam(xsDataMOSFLMBeam)
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
xsDataMOSFLMInput.setDetector(xsDataMOSFLMDetector)
xsDataMOSFLMInput.setDirectory(XSDataString("/tmp"))
xsDataMOSFLMInput.setTemplate(XSDataString("testdata_1_###.img"))
xsDataMOSFLMInput.setWavelength(XSDataWavelength(1.1111))
xsDataMOSFLMInput.setDistance(XSDataLength(222.22))
edPluginMOSFLMv10 = self.createPlugin()
edPluginMOSFLMv10.setScriptExecutable("cat")
edPluginMOSFLMv10.setConfiguration(xsPluginItem)
edPluginMOSFLMv10.configure()
edPluginMOSFLMv10.setXSDataInputClass(XSDataMOSFLMInput)
edPluginMOSFLMv10.setDataInput(xsDataMOSFLMInput)
edPluginMOSFLMv10.generateMOSFLMCommands()
edListCommands = edPluginMOSFLMv10.getListCommandExecution()
edListCommandsReference = ['WAVELENGTH 1.1111', 'DISTANCE 222.22', 'BEAM 1.0 2.0', 'DETECTOR ADSC', 'DIRECTORY /tmp', 'TEMPLATE testdata_1_###.img', 'RASTER 15 15 3 3 3']
EDAssert.equal(edListCommandsReference, edListCommands, "MOSFLM commands with ratser configured")
def testGenerateMOSFLMCommands(self):
xsDataMOSFLMInput = XSDataMOSFLMInput()
xsDataMOSFLMBeam = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeam.setX(XSDataLength(1.0))
xsDataMOSFLMBeam.setY(XSDataLength(2.0))
xsDataMOSFLMInput.setBeam(xsDataMOSFLMBeam)
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
xsDataMOSFLMInput.setDetector(xsDataMOSFLMDetector)
xsDataMOSFLMInput.setDirectory(XSDataString("/tmp"))
xsDataMOSFLMInput.setTemplate(XSDataString("testdata_1_###.img"))
xsDataMOSFLMInput.setWavelength(XSDataWavelength(1.1111))
xsDataMOSFLMInput.setDistance(XSDataLength(222.22))
edPluginMOSFLMv10 = self.createPlugin()
edPluginMOSFLMv10.setScriptExecutable("cat")
edPluginMOSFLMv10.configure()
edPluginMOSFLMv10.setXSDataInputClass(XSDataMOSFLMInput)
edPluginMOSFLMv10.setDataInput(xsDataMOSFLMInput)
edPluginMOSFLMv10.generateMOSFLMCommands()
edListCommands = edPluginMOSFLMv10.getListCommandExecution()
edListCommandsReference = ['WAVELENGTH 1.1111', 'DISTANCE 222.22', 'BEAM 1.0 2.0', 'DETECTOR ADSC', 'DIRECTORY /tmp', 'TEMPLATE testdata_1_###.img']
EDAssert.equal(edListCommandsReference, edListCommands, "MOSFLM commands")
self.cleanUp(edPluginMOSFLMv10)
def getXSDataMOSFLMDetector(_xsDataDetector):
"""
Translates an XSDataDetector object to XSDataMOSFLMv10.
"""
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMDetector
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
strDetectorType = _xsDataDetector.getType().getValue()
if (strDetectorType == "q4") or \
(strDetectorType == "q4-2x") or \
(strDetectorType == "q210") or \
(strDetectorType == "q210-2x") or \
(strDetectorType == "q315") or \
(strDetectorType == "q315-2x"):
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
elif (strDetectorType == "mar165") or \
(strDetectorType == "mar225"):
xsDataMOSFLMDetector.setType(XSDataString("MARCCD"))
elif (strDetectorType == "pilatus6m"
or strDetectorType == "pilatus2m"):
xsDataMOSFLMDetector.setType(XSDataString("PILATUS"))
elif strDetectorType.startswith("eiger2"):
xsDataMOSFLMDetector.setType(XSDataString("EIGER2"))
elif strDetectorType.startswith("eiger"):
xsDataMOSFLMDetector.setType(XSDataString("EIGER"))
elif (strDetectorType == "raxis4"):
xsDataMOSFLMDetector.setType(XSDataString("RAXISIV"))
else:
# This is a temporary solution for the exception problem pointed out in bug #43.
# Instead of raising an exception with a known type we send the error message as a string.
strErrorMessage = "EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector: Unknown detector type : " + strDetectorType
raise BaseException(strErrorMessage)
if (_xsDataDetector.getNumberPixelX() is not None):
xsDataMOSFLMDetector.setNumberPixelX(
_xsDataDetector.getNumberPixelX())
if (_xsDataDetector.getNumberPixelY() is not None):
xsDataMOSFLMDetector.setNumberPixelY(
_xsDataDetector.getNumberPixelY())
if (_xsDataDetector.getPixelSizeX() is not None):
xsDataMOSFLMDetector.setPixelSizeX(_xsDataDetector.getPixelSizeX())
if (_xsDataDetector.getPixelSizeY() is not None):
xsDataMOSFLMDetector.setPixelSizeY(_xsDataDetector.getPixelSizeY())
return xsDataMOSFLMDetector
def getXSDataMOSFLMDetector(_xsDataDetector):
"""
Translates an XSDataDetector object to XSDataMOSFLMv10.
"""
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMDetector
xsDataMOSFLMDetector = XSDataMOSFLMDetector()
strDetectorType = _xsDataDetector.getType().getValue()
if (strDetectorType == "q4") or \
(strDetectorType == "q4-2x") or \
(strDetectorType == "q210") or \
(strDetectorType == "q210-2x") or \
(strDetectorType == "q315") or \
(strDetectorType == "q315-2x"):
xsDataMOSFLMDetector.setType(XSDataString("ADSC"))
elif (strDetectorType == "mar165") or \
(strDetectorType == "mar225"):
xsDataMOSFLMDetector.setType(XSDataString("MARCCD"))
elif (strDetectorType == "pilatus6m" or strDetectorType == "pilatus2m"):
xsDataMOSFLMDetector.setType(XSDataString("PILATUS"))
elif (strDetectorType == "raxis4"):
xsDataMOSFLMDetector.setType(XSDataString("RAXISIV"))
else:
# This is a temporary solution for the exception problem pointed out in bug #43.
# Instead of raising an exception with a known type we send the error message as a string.
strErrorMessage = "EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector: Unknown detector type : " + strDetectorType
raise Exception, strErrorMessage
if (_xsDataDetector.getNumberPixelX() is not None):
xsDataMOSFLMDetector.setNumberPixelX(_xsDataDetector.getNumberPixelX())
if (_xsDataDetector.getNumberPixelY() is not None):
xsDataMOSFLMDetector.setNumberPixelY(_xsDataDetector.getNumberPixelY())
if (_xsDataDetector.getPixelSizeX() is not None):
xsDataMOSFLMDetector.setPixelSizeX(_xsDataDetector.getPixelSizeX())
if (_xsDataDetector.getPixelSizeY() is not None):
xsDataMOSFLMDetector.setPixelSizeY(_xsDataDetector.getPixelSizeY())
return xsDataMOSFLMDetector