parser.add_argument("--package",
help="Data package containing the output of step 2",
required=True,
type=str)
parser.add_argument(
"--masterfile",
help="Path to file containing list of transients in this set",
required=True,
type=str)
# parser.add_argument("--evtfile", help="Main event file for observation, used to get total exposure time",
# required=True, type=str)
# Get logger for this command
logger = logging_system.get_logger(os.path.basename(sys.argv[0]))
# Instance the command runner
runner = CommandRunner(logger)
args = parser.parse_args()
data_package = DataPackage(sanitize_filename(args.package))
for bbfile_tag in data_package.find_all("ccd_?_check_var"):
logger.info("Processing %s..." % bbfile_tag)
bbfile = data_package.get(bbfile_tag).filename
import fnmatch
import os
import shutil
import yaml
from XtDac.ChandraUtils.logging_system import get_logger
from XtDac.ChandraUtils.sanitize_filename import sanitize_filename
from XtDac.ChandraUtils.work_within_directory import work_within_directory
logger = get_logger("DataPackage")
_index_file = "index.yml"
def _check_directory(directory):
sanitized_directory = sanitize_filename(directory)
assert os.path.exists(
sanitized_directory
), "Directory %s does not exists" % sanitized_directory
assert os.path.isdir(
sanitized_directory
), "The file %s is not a directory" % sanitized_directory
return sanitized_directory
class File(object):
def __init__(self, filename, description):
from XtDac.ChandraUtils.run_command import CommandRunner
from XtDac.ChandraUtils.logging_system import get_logger
if __name__ == "__main__":
parser = argparse.ArgumentParser(
description='Create new event files separated by CCD')
parser.add_argument('--evtfile',
help="Event file name",
type=str,
required=True)
args = parser.parse_args()
logger = get_logger("xtc_separate_CCDs.py")
runner = CommandRunner(logger)
logger.info("Separating by CCD...")
for ccd_id in range(10):
ccd_file = "ccd_%s_%s" % (ccd_id, os.path.basename(args.evtfile))
cmd_line = "dmcopy %s[EVENTS][ccd_id=%s] %s option=all clobber=yes" % (
args.evtfile, ccd_id, ccd_file)
runner.run(cmd_line)
# check if certain CCD files are empty and then delete them if so
if __name__ == "__main__":
parser = argparse.ArgumentParser(description='Create source database')
parser.add_argument("-c",
"--config_file",
help="Path to the configuration file",
type=str,
required=True)
# assumption = all level 3 region files and event file are already downloaded into same directory, the region_dir
args = parser.parse_args()
# Get logger
logger = get_logger(os.path.basename(sys.argv[0]))
# Get the configuration
config = get_configuration(args.config_file)
region_dir = sanitize_filename(config['region repository'])
with work_within_directory.work_within_directory(region_dir):
# Find all region files
region_files = find_files.find_files('.', '*_reg3.fits.gz')
logger.info("Found %s region files" % len(region_files))
db = collections.OrderedDict()
