def update_selection_profile_plot(self):
if self.parent.is_file_imported:
self.update_selection_plot()
self.parent.update_vertical_line_in_profile_plot()
else:
o_get = Get(parent=self.parent)
x_axis, x_axis_label = o_get.x_axis()
self.parent.ui.profile.clear()
# large selection region
[x0, y0, x1, y1, _, _] = o_get.selection_roi_dimension()
profile = o_get.profile_of_roi(x0, y0, x1, y1)
x_axis, y_axis = check_size(x_axis=x_axis, y_axis=profile)
self.parent.ui.profile.plot(x_axis,
y_axis,
pen=(self.parent.selection_roi_rgb[0],
self.parent.selection_roi_rgb[1],
self.parent.selection_roi_rgb[2]))
# shrinkable region
shrinking_roi = self.get_coordinates_of_new_inside_selection_box()
x0 = shrinking_roi['x0']
y0 = shrinking_roi['y0']
x1 = shrinking_roi['x1']
y1 = shrinking_roi['y1']
profile = o_get.profile_of_roi(x0, y0, x1, y1)
x_axis, y_axis = check_size(x_axis=x_axis, y_axis=profile)
self.parent.ui.profile.plot(x_axis,
y_axis,
pen=(self.parent.shrinking_roi_rgb[0],
self.parent.shrinking_roi_rgb[1],
self.parent.shrinking_roi_rgb[2]))
self.parent.ui.profile.setLabel("bottom", x_axis_label)
self.parent.ui.profile.setLabel("left", 'Mean transmission')
# vertical line showing peak to fit
bragg_edge_range = [
x_axis[self.parent.bragg_edge_range[0]],
x_axis[self.parent.bragg_edge_range[1]]
]
self.parent.bragg_edge_range_ui = pg.LinearRegionItem(
values=bragg_edge_range,
orientation=None,
brush=None,
movable=True,
bounds=None)
self.parent.bragg_edge_range_ui.sigRegionChanged.connect(
self.parent.bragg_edge_range_changed)
self.parent.bragg_edge_range_ui.setZValue(-10)
self.parent.ui.profile.addItem(self.parent.bragg_edge_range_ui)
def update_dict_profile_to_fit(self):
[left_range, right_range] = self.bragg_edge_range
o_selection = BraggEdgeSelectionTab(parent=self)
[x0, y0, x1, y1] = o_selection.get_shrinking_roi_dimension()
o_get = Get(parent=self)
profile = o_get.profile_of_roi(x0=x0, y0=y0,
x1=x1, y1=y1)
yaxis = profile[left_range: right_range]
all_x_axis = o_get.all_x_axis()
index_array = all_x_axis['index'][0]
tof_array = all_x_axis['tof'][0]
lambda_array = all_x_axis['lambda'][0]
index_selected = index_array[left_range: right_range]
tof_selected = tof_array[left_range: right_range]
lambda_selected = lambda_array[left_range: right_range]
profile_to_fit = {'yaxis': yaxis,
'xaxis': {'index': index_selected,
'tof': tof_selected,
'lambda': lambda_selected},
}
self.dict_profile_to_fit = profile_to_fit
def add_profile_to_dict_of_all_regions(self, dict_regions=None):
for _key in dict_regions.keys():
current_region = dict_regions[_key]
x0 = current_region['x0']
y0 = current_region['y0']
width = current_region['width']
height = current_region['height']
o_get = Get(parent=self)
profile = o_get.profile_of_roi(x0=x0, y0=y0,
x1=x0 + width,
y1=y0 + height)
current_region['profile'] = profile
