def _createPETTumorSegmentationParameterNode(self):
"""create the PETTumorSegmentation parameter node - a singleton in the scene
This is used internally by getPETTumorSegmentationParameterNode - shouldn't really
be called for any other reason.
"""
node = slicer.vtkMRMLPETTumorSegmentationParametersNode()
self.scene.AddNode(node)
# Since we are a singleton, the scene won't add our node into the scene,
# but will instead insert a copy, so we find that and return it
node = self._findPETTumorSegmentationParameterNodeInScene()
centerFiducialList = slicer.vtkMRMLFiducialListNode()
self.scene.AddNode(centerFiducialList)
node.SetCenterPointIndicatorListReference(centerFiducialList.GetID())
globalRefinementFiducialList = slicer.vtkMRMLFiducialListNode()
self.scene.AddNode(globalRefinementFiducialList)
node.SetGlobalRefinementIndicatorListReference(
globalRefinementFiducialList.GetID())
localRefinementFiducialList = slicer.vtkMRMLFiducialListNode()
self.scene.AddNode(localRefinementFiducialList)
node.SetLocalRefinementIndicatorListReference(
localRefinementFiducialList.GetID())
return node
def __init__(self, slicerVersion):
self.volume = slicer.vtkMRMLScalarVolumeNode()
self.display = slicer.vtkMRMLScalarVolumeDisplayNode()
if slicerVersion == 4:
self.fiducialList = slicer.vtkMRMLAnnotationHierarchyNode()
self.newFiducial = slicer.vtkMRMLAnnotationFiducialNode()
else:
self.fiducialList = slicer.vtkMRMLFiducialListNode()
self.newFiducial = slicer.vtkMRMLFiducial()
def _setFiducialLists(self, sceneFixedList=None, sceneMovingList=None):
self.fixed = sceneFixedList
self.moving = sceneMovingList
if self.fixed.GetClassName() == 'vtkMRMLAnnotationHierarchyNode':
# slicer4 style
self.fiducialStyle = 4
self.fixedCount = self.fixed.GetNumberOfChildren()
self.movingCount = self.moving.GetNumberOfChildren()
self.newFixed = slicer.vtkMRMLAnnotationHierarchyNode()
self.newMoving = slicer.vtkMRMLAnnotationHierarchyNode()
else:
# slicer3 style
self.fiducialStyle = 3
self.fixedCount = self.fixed.GetNumberOfFiducials()
self.movingCount = self.moving.GetNumberOfFiducials()
self.newFixed = slicer.vtkMRMLFiducialListNode()
self.newMoving = slicer.vtkMRMLFiducialListNode()
return self.run()
def _setFiducialLists(self, sceneFixedList=None, sceneMovingList=None):
self.fixed = sceneFixedList
self.moving = sceneMovingList
if self.fixed.GetClassName() == 'vtkMRMLAnnotationHierarchyNode':
# slicer4 style
self.fiducialStyle = 4
self.fixedCount = self.fixed.GetNumberOfChildren()
self.movingCount = self.moving.GetNumberOfChildren()
self.newFixed = slicer.vtkMRMLAnnotationHierarchyNode()
self.newMoving = slicer.vtkMRMLAnnotationHierarchyNode()
else:
# slicer3 style
self.fiducialStyle = 3
self.fixedCount = self.fixed.GetNumberOfFiducials()
self.movingCount = self.moving.GetNumberOfFiducials()
self.newFixed = slicer.vtkMRMLFiducialListNode()
self.newMoving = slicer.vtkMRMLFiducialListNode()
return self.run()
def __init__(self, slicerVersion):
self.volume = slicer.vtkMRMLScalarVolumeNode()
self.display = slicer.vtkMRMLScalarVolumeDisplayNode()
if slicerVersion == 4:
self.fiducialList = slicer.vtkMRMLAnnotationHierarchyNode()
self.newFiducial = slicer.vtkMRMLAnnotationFiducialNode()
else:
self.fiducialList = slicer.vtkMRMLFiducialListNode()
self.newFiducial = slicer.vtkMRMLFiducial()
def _createPETTumorSegmentationParameterNode(self): """create the PETTumorSegmentation parameter node - a singleton in the scene This is used internally by getPETTumorSegmentationParameterNode - shouldn't really be called for any other reason. """ node = slicer.modulemrml.vtkMRMLPETTumorSegmentationParametersNode() self.scene.AddNode(node) # Since we are a singleton, the scene won't add our node into the scene, # but will instead insert a copy, so we find that and return it node = self._findPETTumorSegmentationParameterNodeInScene() centerFiducialList = slicer.vtkMRMLFiducialListNode() self.scene.AddNode( centerFiducialList ) node.SetCenterPointIndicatorListReference( centerFiducialList.GetID() ) globalRefinementFiducialList = slicer.vtkMRMLFiducialListNode() self.scene.AddNode( globalRefinementFiducialList ) node.SetGlobalRefinementIndicatorListReference( globalRefinementFiducialList.GetID() ) localRefinementFiducialList = slicer.vtkMRMLFiducialListNode() self.scene.AddNode( localRefinementFiducialList ) node.SetLocalRefinementIndicatorListReference( localRefinementFiducialList.GetID() ) return node