def initialize(self):
self.layoutManager=slicer.app.layoutManager()
self.threeDWidget=self.layoutManager.threeDWidget(0)
self.threeDView=self.threeDWidget.threeDView()
self.renderWindow=self.threeDView.renderWindow()
self.renderers=self.renderWindow.GetRenderers()
self.renderer=self.renderers.GetFirstRenderer()
self.actor = vtk.vtkActor()
def initialize(self):
self.layoutManager=slicer.app.layoutManager()
self.threeDWidget=self.layoutManager.threeDWidget(0)
self.threeDView=self.threeDWidget.threeDView()
self.renderWindow=self.threeDView.renderWindow()
self.renderers=self.renderWindow.GetRenderers()
self.renderer=self.renderers.GetFirstRenderer()
self.polydata = vtk.vtkPolyData()
self.points = vtk.vtkPoints()
self.planeSource = vtk.vtkPlaneSource()
self.mapper = vtk.vtkPolyDataMapper()
self.actor = vtk.vtkActor()
self.renderer.AddViewProp(self.actor)
self.renderWindow.AddRenderer(self.renderer)
def initialize(self):
self.layoutManager = slicer.app.layoutManager()
self.threeDWidget = self.layoutManager.threeDWidget(0)
self.threeDView = self.threeDWidget.threeDView()
self.renderWindow = self.threeDView.renderWindow()
self.renderers = self.renderWindow.GetRenderers()
self.renderer = self.renderers.GetFirstRenderer()
self.polydata = vtk.vtkPolyData()
self.points = vtk.vtkPoints()
self.planeSource = vtk.vtkPlaneSource()
self.mapper = vtk.vtkPolyDataMapper()
self.actor = vtk.vtkActor()
self.renderer.AddViewProp(self.actor)
self.renderWindow.AddRenderer(self.renderer)
def test_ShadedModels1(self):
""" Ideally you should have several levels of tests. At the lowest level
tests should exercise the functionality of the logic with different inputs
(both valid and invalid). At higher levels your tests should emulate the
way the user would interact with your code and confirm that it still works
the way you intended.
One of the most important features of the tests is that it should alert other
developers when their changes will have an impact on the behavior of your
module. For example, if a developer removes a feature that you depend on,
your test should break so they know that the feature is needed.
"""
self.delayDisplay("Starting the test")
import SampleData
sampleDataLogic = SampleData.SampleDataLogic()
print("Getting MR Head Volume")
mrHeadVolume = sampleDataLogic.downloadMRHead()
resize = vtk.vtkImageResize()
resize.SetInputDataObject(mrHeadVolume.GetImageData())
resize.SetOutputDimensions(256,256,128)
resize.Update()
tdw = slicer.qMRMLThreeDWidget()
tdw.setMRMLScene(slicer.mrmlScene)
tdw.setMRMLViewNode(slicer.util.getNode("*ViewNode*"))
tdw.show()
from vtkSlicerShadedActorModuleLogicPython import *
shadedActor=vtkOpenGLShadedActor()
tdv = tdw.threeDView()
rw = tdv.renderWindow()
rens = rw.GetRenderers()
ren = rens.GetItemAsObject(0)
ren.AddActor(shadedActor)
mapper = vtk.vtkPolyDataMapper()
shadedActor.SetMapper(mapper)
shadedActor.SetVertexShaderSource("""
#version 120
attribute vec3 vertexAttribute;
attribute vec2 textureCoordinateAttribute;
varying vec4 interpolatedColor;
varying vec3 interpolatedTextureCoordinate;
void main()
{
interpolatedColor = vec4(0.5) + vec4(vertexAttribute, 1.);
interpolatedTextureCoordinate = vec3(textureCoordinateAttribute, .5);
gl_Position = vec4(vertexAttribute, 1.);
}
""")
shadedActor.SetFragmentShaderSource("""
#version 120
varying vec4 interpolatedColor;
varying vec3 interpolatedTextureCoordinate;
uniform sampler3D volumeSampler;
void main()
{
gl_FragColor = vec4 ( 1.0, 0.0, 0.0, 1.0 );
gl_FragColor = interpolatedColor;
vec4 volumeSample = texture3D(volumeSampler, interpolatedTextureCoordinate);
volumeSample *= 100;
gl_FragColor = mix( volumeSample, interpolatedColor, 0.5);
vec4 integratedRay = vec4(0.);
for (int i = 0; i < 256; i++) {
vec3 samplePoint = vec3(interpolatedTextureCoordinate.st, i/256.);
vec4 volumeSample = texture3D(volumeSampler, samplePoint);
integratedRay += volumeSample;
}
gl_FragColor = integratedRay;
}
""")
shadedActor.SetTextureImageData(resize.GetOutputDataObject(0))
#shadedActor.SetTextureImageData(mrHeadVolume.GetImageData())
sphereSource = vtk.vtkSphereSource()
mapper.SetInputConnection(sphereSource.GetOutputPort())
actor = vtk.vtkActor()
actor.SetScale(20,20,20)
actor.SetMapper(mapper)
ren.AddActor(actor)
rw.Render()
wti = vtk.vtkWindowToImageFilter()
wti.SetInput(rw)
iv = vtk.vtkImageViewer()
iv.SetColorLevel(128)
iv.SetColorWindow(256)
iv.SetInputConnection(wti.GetOutputPort())
iv.Render()
extensionManager = vtk.vtkOpenGLExtensionManager()
extensionManager.SetRenderWindow(rw)
extensionManager.Update()
print(extensionManager)
print(extensionManager.GetDriverGLVendor())
print(extensionManager.GetDriverGLVersion())
print(extensionManager.GetDriverGLRenderer())
slicer.modules.ShadedModelsWidget.tdw = tdw
slicer.modules.ShadedModelsWidget.iv = iv
def makeScene(self, sliceLogic):
sliceNode = sliceLogic.GetBackgroundLayer().GetSliceNode()
sliceViewName = sliceNode.GetLayoutName()
if self.sliceViews[sliceViewName]:
ren = self.renderers[sliceViewName]
rw = self.sliceViews[sliceViewName].renderWindow()
ren.SetViewport(self.viewPortStartWidth,0,1,self.viewPortFinishHeight)
ren.SetLayer(1)
if self.showHumanModelCheckBox.checked:
if self.humanActor == None:
#
# Making vtk mappers and actors
#
# Mappers
humanMapper = vtk.vtkPolyDataMapper()
if vtk.VTK_MAJOR_VERSION <= 5:
humanMapper.SetInput(self.humanNode.GetPolyData())
else:
humanMapper.SetInputData(self.humanNode.GetPolyData())
shortsMapper = vtk.vtkPolyDataMapper()
if vtk.VTK_MAJOR_VERSION <= 5:
shortsMapper.SetInput(self.shortsNode.GetPolyData())
else:
shortsMapper.SetInputData(self.shortsNode.GetPolyData())
leftShoeMapper = vtk.vtkPolyDataMapper()
if vtk.VTK_MAJOR_VERSION <= 5:
leftShoeMapper.SetInput(self.leftShoeNode.GetPolyData())
else:
leftShoeMapper.SetInputData(self.leftShoeNode.GetPolyData())
rightShoeMapper = vtk.vtkPolyDataMapper()
if vtk.VTK_MAJOR_VERSION <= 5:
rightShoeMapper.SetInput(self.rightShoeNode.GetPolyData())
else:
rightShoeMapper.SetInputData(self.rightShoeNode.GetPolyData())
# Actors
humanModelScale = 0.01
self.humanActor = vtk.vtkActor()
self.humanActor.SetMapper(humanMapper)
#self.humanActor.GetProperty().SetColor(0.93,0.81,0.80)
self.humanActor.GetProperty().SetColor(255/256,204/256,34/256)
self.humanActor.SetScale(humanModelScale,humanModelScale,humanModelScale)
self.shortsActor = vtk.vtkActor()
self.shortsActor.SetMapper(shortsMapper)
#self.shortsActor.GetProperty().SetColor(0,0,1)
self.shortsActor.GetProperty().SetColor(0,0,1)
self.shortsActor.SetScale(humanModelScale,humanModelScale,humanModelScale)
self.leftShoeActor = vtk.vtkActor()
self.leftShoeActor.SetMapper(leftShoeMapper)
self.leftShoeActor.GetProperty().SetColor(1,0,0)
self.leftShoeActor.SetScale(humanModelScale,humanModelScale,humanModelScale)
self.rightShoeActor = vtk.vtkActor()
self.rightShoeActor.SetMapper(rightShoeMapper)
self.rightShoeActor.GetProperty().SetColor(0,1,0)
self.rightShoeActor.SetScale(humanModelScale,humanModelScale,humanModelScale)
if self.cube == None:
self.cube = vtk.vtkAnnotatedCubeActor()
self.cube.SetXPlusFaceText('R')
self.cube.SetXMinusFaceText('L')
self.cube.SetYMinusFaceText('A')
self.cube.SetYPlusFaceText('P')
self.cube.SetZMinusFaceText('I')
self.cube.SetZPlusFaceText('S')
self.cube.SetZFaceTextRotation(90)
self.cube.GetTextEdgesProperty().SetColor(0.95,0.95,0.95)
self.cube.GetTextEdgesProperty().SetLineWidth(1)
self.cube.GetCubeProperty().SetColor(0.15,0.15,0.15)
if self.axes == None:
self.axes = vtk.vtkAxesActor()
self.axes.SetXAxisLabelText('R')
self.axes.SetYAxisLabelText('A')
self.axes.SetZAxisLabelText('S')
transform = vtk.vtkTransform()
transform.Translate(0,0,0)
self.axes.SetUserTransform(transform)
# Add actors to renderer
if self.cubeRadioButton.checked:
ren.AddActor(self.cube)
ren.RemoveActor(self.humanActor)
ren.RemoveActor(self.shortsActor)
ren.RemoveActor(self.leftShoeActor)
ren.RemoveActor(self.rightShoeActor)
ren.RemoveActor(self.axes)
if self.axesRadioButton.checked:
ren.AddActor(self.axes)
ren.RemoveActor(self.humanActor)
ren.RemoveActor(self.shortsActor)
ren.RemoveActor(self.leftShoeActor)
ren.RemoveActor(self.rightShoeActor)
ren.RemoveActor(self.cube)
if self.humanRadioButton.checked:
ren.AddActor(self.humanActor)
ren.AddActor(self.shortsActor)
ren.AddActor(self.leftShoeActor)
ren.AddActor(self.rightShoeActor)
ren.RemoveActor(self.cube)
ren.RemoveActor(self.axes)
# Calculate the camera position and viewup based on XYToRAS matrix
camera = vtk.vtkCamera()
m = sliceNode.GetSliceToRAS()
v = np.array([[m.GetElement(0,0),m.GetElement(0,1),m.GetElement(0,2)],
[m.GetElement(1,0),m.GetElement(1,1),m.GetElement(1,2)],
[m.GetElement(2,0),m.GetElement(2,1),m.GetElement(2,2)]])
det = np.linalg.det(v)
if det > 0: # right hand
y = np.array([0,0,-self.cameraPositionMultiplier])
elif det < 0: # left hand
y = np.array([0,0,self.cameraPositionMultiplier])
x = np.matrix([[m.GetElement(0,0),m.GetElement(0,1),m.GetElement(0,2)],
[m.GetElement(1,0),m.GetElement(1,1),m.GetElement(1,2)],
[m.GetElement(2,0),m.GetElement(2,1),m.GetElement(2,2)]])
# Calculating position
position = np.inner(x,y)
camera.SetPosition(-position[0,0],-position[0,1],-position[0,2])
'''
m = sliceNode.GetSliceToRAS()
x = np.matrix([[m.GetElement(0,0),m.GetElement(0,1),m.GetElement(0,2)],
[m.GetElement(1,0),m.GetElement(1,1),m.GetElement(1,2)],
[m.GetElement(2,0),m.GetElement(2,1),m.GetElement(2,2)]])
# Calculating position
y = np.array([0,0,self.cameraPositionMultiplier])
position = np.inner(x,y)
camera.SetPosition(-position[0,0],-position[0,1],-position[0,2])
'''
# Calculating viewUp
n = np.array([0,1,0])
viewUp = np.inner(x,n)
camera.SetViewUp(viewUp[0,0],viewUp[0,1],viewUp[0,2])
#ren.PreserveDepthBufferOff()
ren.SetActiveCamera(camera)
rw.AddRenderer(ren)
else:
ren.RemoveActor(self.humanActor)
ren.RemoveActor(self.shortsActor)
ren.RemoveActor(self.leftShoeActor)
ren.RemoveActor(self.rightShoeActor)
ren.RemoveActor(self.axes)
ren.RemoveActor(self.cube)
rw.RemoveRenderer(ren)
# Refresh view
self.sliceViews[sliceViewName].scheduleRender()
def iceCream(self):
# based on iceCream.py from VTK/Examples/Modelling
# This example demonstrates how to use boolean combinations of implicit
# functions to create a model of an ice cream cone.
import vtk
from vtk.util.colors import chocolate, mint
# Create implicit function primitives. These have been carefully
# placed to give the effect that we want. We are going to use various
# combinations of these functions to create the shape we want; for
# example, we use planes intersected with a cone (which is infinite in
# extent) to get a finite cone.
cone = vtk.vtkCone()
cone.SetAngle(20)
vertPlane = vtk.vtkPlane()
vertPlane.SetOrigin(.1, 0, 0)
vertPlane.SetNormal(-1, 0, 0)
basePlane = vtk.vtkPlane()
basePlane.SetOrigin(1.2, 0, 0)
basePlane.SetNormal(1, 0, 0)
iceCream = vtk.vtkSphere()
iceCream.SetCenter(1.333, 0, 0)
iceCream.SetRadius(0.5)
bite = vtk.vtkSphere()
bite.SetCenter(1.5, 0, 0.5)
bite.SetRadius(0.25)
# Combine primitives to build ice-cream cone. Clip the cone with planes.
theCone = vtk.vtkImplicitBoolean()
theCone.SetOperationTypeToIntersection()
theCone.AddFunction(cone)
theCone.AddFunction(vertPlane)
theCone.AddFunction(basePlane)
# Take a bite out of the ice cream.
theCream = vtk.vtkImplicitBoolean()
theCream.SetOperationTypeToDifference()
theCream.AddFunction(iceCream)
theCream.AddFunction(bite)
# The sample function generates a distance function from the implicit
# function (which in this case is the cone). This is then contoured to
# get a polygonal surface.
theConeSample = vtk.vtkSampleFunction()
theConeSample.SetImplicitFunction(theCone)
theConeSample.SetModelBounds(-1, 1.5, -1.25, 1.25, -1.25, 1.25)
theConeSample.SetSampleDimensions(60, 60, 60)
theConeSample.ComputeNormalsOff()
theConeSurface = vtk.vtkContourFilter()
theConeSurface.SetInputConnection(theConeSample.GetOutputPort())
theConeSurface.SetValue(0, 0.0)
coneMapper = vtk.vtkPolyDataMapper()
coneMapper.SetInputConnection(theConeSurface.GetOutputPort())
coneMapper.ScalarVisibilityOff()
coneActor = vtk.vtkActor()
coneActor.SetMapper(coneMapper)
coneActor.GetProperty().SetColor(chocolate)
# The same here for the ice cream.
theCreamSample = vtk.vtkSampleFunction()
theCreamSample.SetImplicitFunction(theCream)
theCreamSample.SetModelBounds(0, 2.5, -1.25, 1.25, -1.25, 1.25)
theCreamSample.SetSampleDimensions(60, 60, 60)
theCreamSample.ComputeNormalsOff()
theCreamSurface = vtk.vtkContourFilter()
theCreamSurface.SetInputConnection(theCreamSample.GetOutputPort())
theCreamSurface.SetValue(0, 0.0)
creamMapper = vtk.vtkPolyDataMapper()
creamMapper.SetInputConnection(theCreamSurface.GetOutputPort())
creamMapper.ScalarVisibilityOff()
creamActor = vtk.vtkActor()
creamActor.SetMapper(creamMapper)
creamActor.GetProperty().SetColor(mint)
# Create the usual rendering stuff
ren = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)
# Add the actors to the renderer, set the background and size
ren.AddActor(coneActor)
ren.AddActor(creamActor)
ren.SetBackground(1, 1, 1)
renWin.SetSize(500, 500)
ren.ResetCamera()
ren.GetActiveCamera().Roll(90)
ren.GetActiveCamera().Dolly(1.5)
ren.ResetCameraClippingRange()
iren.Initialize()
renWin.Render()
iren.Start()
return iren
def test_ShadedModels1(self):
""" Ideally you should have several levels of tests. At the lowest level
tests should exercise the functionality of the logic with different inputs
(both valid and invalid). At higher levels your tests should emulate the
way the user would interact with your code and confirm that it still works
the way you intended.
One of the most important features of the tests is that it should alert other
developers when their changes will have an impact on the behavior of your
module. For example, if a developer removes a feature that you depend on,
your test should break so they know that the feature is needed.
"""
self.delayDisplay("Starting the test")
import SampleData
sampleDataLogic = SampleData.SampleDataLogic()
print("Getting MR Head Volume")
mrHeadVolume = sampleDataLogic.downloadMRHead()
resize = vtk.vtkImageResize()
resize.SetInputDataObject(mrHeadVolume.GetImageData())
resize.SetOutputDimensions(256, 256, 128)
resize.Update()
tdw = slicer.qMRMLThreeDWidget()
tdw.setMRMLScene(slicer.mrmlScene)
tdw.setMRMLViewNode(slicer.util.getNode("*ViewNode*"))
tdw.show()
from vtkSlicerShadedActorModuleLogicPython import *
shadedActor = vtkOpenGLShadedActor()
tdv = tdw.threeDView()
rw = tdv.renderWindow()
rens = rw.GetRenderers()
ren = rens.GetItemAsObject(0)
ren.AddActor(shadedActor)
mapper = vtk.vtkPolyDataMapper()
shadedActor.SetMapper(mapper)
shadedActor.SetVertexShaderSource("""
#version 120
attribute vec3 vertexAttribute;
attribute vec2 textureCoordinateAttribute;
varying vec4 interpolatedColor;
varying vec3 interpolatedTextureCoordinate;
void main()
{
interpolatedColor = vec4(0.5) + vec4(vertexAttribute, 1.);
interpolatedTextureCoordinate = vec3(textureCoordinateAttribute, .5);
gl_Position = vec4(vertexAttribute, 1.);
}
""")
shadedActor.SetFragmentShaderSource("""
#version 120
varying vec4 interpolatedColor;
varying vec3 interpolatedTextureCoordinate;
uniform sampler3D volumeSampler;
void main()
{
gl_FragColor = vec4 ( 1.0, 0.0, 0.0, 1.0 );
gl_FragColor = interpolatedColor;
vec4 volumeSample = texture3D(volumeSampler, interpolatedTextureCoordinate);
volumeSample *= 100;
gl_FragColor = mix( volumeSample, interpolatedColor, 0.5);
vec4 integratedRay = vec4(0.);
for (int i = 0; i < 256; i++) {
vec3 samplePoint = vec3(interpolatedTextureCoordinate.st, i/256.);
vec4 volumeSample = texture3D(volumeSampler, samplePoint);
integratedRay += volumeSample;
}
gl_FragColor = integratedRay;
}
""")
shadedActor.SetTextureImageData(resize.GetOutputDataObject(0))
#shadedActor.SetTextureImageData(mrHeadVolume.GetImageData())
sphereSource = vtk.vtkSphereSource()
mapper.SetInputConnection(sphereSource.GetOutputPort())
actor = vtk.vtkActor()
actor.SetScale(20, 20, 20)
actor.SetMapper(mapper)
ren.AddActor(actor)
rw.Render()
wti = vtk.vtkWindowToImageFilter()
wti.SetInput(rw)
iv = vtk.vtkImageViewer()
iv.SetColorLevel(128)
iv.SetColorWindow(256)
iv.SetInputConnection(wti.GetOutputPort())
iv.Render()
extensionManager = vtk.vtkOpenGLExtensionManager()
extensionManager.SetRenderWindow(rw)
extensionManager.Update()
print(extensionManager)
print(extensionManager.GetDriverGLVendor())
print(extensionManager.GetDriverGLVersion())
print(extensionManager.GetDriverGLRenderer())
slicer.modules.ShadedModelsWidget.tdw = tdw
slicer.modules.ShadedModelsWidget.iv = iv
def vtk_to_obj_converter(self, node, radius=0.1, number_of_sides=3):
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
polydata = node.GetPolyData()
tuber = vtk.vtkTubeFilter()
tuber.SetNumberOfSides(int(number_of_sides))
tuber.SetRadius(radius)
tuber.SetInputData(polydata)
tuber.Update()
tubes = tuber.GetOutputDataObject(0)
# scalars = tubes.GetPointData().GetArray(0)
# scalars.SetName("scalars")
triangles = vtk.vtkTriangleFilter()
triangles.SetInputData(tubes)
triangles.Update()
tripolydata = vtk.vtkPolyData()
tripolydata.ShallowCopy(triangles.GetOutput())
# Decrease the number of triangle of 30% to reduce Blender loading costs
decimate = vtk.vtkDecimatePro()
decimate.SetInputData(tripolydata)
decimate.SetTargetReduction(.30)
decimate.Update()
mapper = vtk.vtkPolyDataMapper()
mapper.SetInputConnection(decimate.GetOutputPort())
r = random.randrange(0, 256, 1)
g = random.randrange(0, 256, 1)
b = random.randrange(0, 256, 1)
actor = vtk.vtkActor()
actor.SetMapper(mapper)
# actor.GetProperty().SetColor(0, 0, 0) # Ka: ambient color of the material (r, g, b)
actor.GetProperty().SetDiffuseColor(
r, g, b) # Kd: diffuse color of the material (r, g, b)
# actor.GetProperty().SetSpecularColor(0, 0, 0) # Ks: specular color of the material (r, g, b)
renderer = vtk.vtkRenderer()
renderer.AddActor(actor)
window = vtk.vtkRenderWindow()
window.AddRenderer(renderer)
# Get output path
storageNode = node.GetStorageNode()
filepath = storageNode.GetFullNameFromFileName()
filename = filepath.rsplit('.', 1)
writer = vtk.vtkOBJExporter()
writer.SetFilePrefix(filename[0])
writer.SetInput(window)
writer.Write()
qt.QApplication.restoreOverrideCursor()
if writer.Write() == 0:
qt.QMessageBox.critical(None, "Conversion", "Conversion failed")
else:
qt.QMessageBox.information(None, "Conversion", "Conversion done")