コード例 #1
0
ファイル: likelihoods.py プロジェクト: SMV818VMS/sysbio
def main_rep_1():
    orig_theta = [5., 5.]
    orig_ds = abc.generate_dataset_rep(orig_theta)
    #orig_ds = abc.add_gaussian_noise_full(orig_ds)
    param_range = np.arange(3., 7., 0.1)
    param_range_1 = np.arange(3, 7, 0.1)
    likelihood_vals = np.zeros((len(param_range), len(param_range_1)))
    for ind1, th in enumerate(param_range):
        for ind2, th1 in enumerate(param_range_1):
            sim_ds = abc.generate_dataset_rep([th, th1])
            l = log_likelihood(sim_ds, orig_ds)
            likelihood_vals[ind1, ind2] = l 
            print th, th1, l

    print "========================"
    i,j = np.unravel_index(likelihood_vals.argmax(), likelihood_vals.shape)
    print "max likelihood ", likelihood_vals[i, j], " at: ()",  i, " ,", j, ")"
    
    fig = plt.figure()
    ax = fig.gca(projection='3d')

    m1, m2 = np.meshgrid(param_range, param_range_1)
    print np.shape(m1), np.shape(m2), np.shape(likelihood_vals)
    surf = ax.plot_surface(m1, m2, likelihood_vals.T, rstride=1,  cstride=1, cmap=cm.jet, linewidth=0.1, antialiased=True)


    fig.colorbar(surf, shrink=0.5, aspect=5)
    
    ax.set_xlabel('alpha')
    ax.set_ylabel('beta')
    ax.set_zlabel('likelihood')
    plt.figure()
    plt.imshow(likelihood_vals)
    plt.show()
コード例 #2
0
ファイル: likelihoods.py プロジェクト: SMV818VMS/sysbio
def main_rep():
    orig_theta = [216., 205.]
    orig_ds = abc.generate_dataset_rep(orig_theta)
    param_range = np.arange(0, 250, 5.)
    likelihood_vals = []
    for th in param_range:
        sim_ds = abc.generate_dataset_rep([th])
        likelihood_vals.append(log_likelihood_fourier(sim_ds, orig_ds))
    plt.plot(param_range, likelihood_vals)
    plt.show()