def main():
for file in [
'data/breast-cancer-assignment5.txt', 'data/german-assignment5.txt'
]:
data, labels, types = load_matrix_from_txt(file)
splices = k_fold_split(10, data, labels)
accuracies = []
for i in range(10):
train_indexes = splices[i][0]
test_indexes = splices[i][1]
train_data = np.copy(data[train_indexes])
train_label = np.copy(labels[train_indexes])
test_data = np.copy(data[test_indexes])
test_label = np.copy(labels[test_indexes])
boost = AdaBoost()
boost.train(train_data, train_label, types)
class_result = boost.test(test_data)
accuracy = compute_accuracy(class_result, test_label)
accuracies.append(accuracy)
print 'accuracy: %f' % accuracy
print('file: {}, mean: {}, std: {}'.format(file, np.mean(accuracies),
np.std(accuracies)))
def main():
data = np.loadtxt(open("/Users/rio512hsu/dataset/MachineLearningTechniques" +
"/hw2_adaboost_train.csv", "rb"),
delimiter=" ")
X = data[:, :-1]
y = data[:, -1]
u = np.ones(X.shape[0]) / X.shape[0]
clf = DecisionStump().fit(X, y, u)
# Q12
print clf.getEin()
# Q13
adaboost = AdaBoost(DecisionStump).fit(X, y, 300)
# print adaboost.predict(X)
print np.sum(adaboost.predict(X) != y)
# Q17
test = np.loadtxt(open("/Users/rio512hsu/dataset/" +
"MachineLearningTechniques/" +
"hw2_adaboost_test.csv"),
delimiter=' ')
X_test = test[:, :-1]
y_test = test[:, -1]
print np.sum(clf.predict(X) != y) / float(test.shape[0])
# Q18
print np.sum(adaboost.predict(X_test) != y_test) / float(test.shape[0])
return 0
def testTitanicCARTAdaBoost():
print('-' * 30, '\ntestTitanicCARTAdaBoost\n', '-' * 30)
trd = pd.read_csv('Titanic_dataset/train.csv')
# drop useless and continue features
#for i in ["PassengerId", "Name", "Ticket", "Cabin", "Age", "SibSp", "Parch", "Fare"]:
for i in ["PassengerId", "Name", "Ticket", "Cabin"]:
trd.pop(i)
trd = trd.dropna() # drop nan values
# convert non-digits to digits
trd = pd.get_dummies(trd, columns=['Sex'])
Embarked_map = {
val: idx
for idx, val in enumerate(trd['Embarked'].unique())
}
trd['Embarked'] = trd['Embarked'].map(Embarked_map)
if DEBUG: print(trd[:5])
# create train data
trdd = trd.sample(frac=0.4)
# using "Survived" as labels
trl = trd.pop("Survived")
trl[trl == 0] = -1
trll = trdd.pop("Survived")
trll[trll == 0] = -1
# training tree
t = AdaBoost(CART_weight_classifier, 10)
t.fit(trdd, trll)
# prediction
pred = t.predict(trd)
print('Acc.: ', np.sum(pred == trl.reset_index(drop=True)) / trl.shape[0])
def q_8(self):
tx, ty = ex4_tools.generate_data(5000, noise_ratio=0)
x, y = ex4_tools.generate_data(200, noise_ratio=0)
self.a_boost = AdaBoost(WL=ex4_tools.DecisionStump, T=500)
self.a_boost.train(tx, ty)
training_errs, test_errs = self.get_ab_errs(tx, ty, x, y)
self.plt_q_8(training_errs, test_errs)
def get_ab_errors(self, tx, ty, x, y):
errors = []
for t in self.ts:
a_boost = AdaBoost(WL=ex4_tools.DecisionStump, T=t)
a_boost.train(tx, ty)
errors.append(a_boost.error(x, y, t))
return errors
def main():
''' Load data, split data, creates adaboost algorithm
with decision stump, calculates errors, save final file'''
classifier = AdaBoost(DecisionStump)
num_sets = 50
T = 100
percentage = 0.9
all_errors_train = []
all_errors_test = []
aver_error_train = []
aver_error_test = []
# split data in the # of datasets
split_data(percentage, num_sets)
# run for all datasets, for boosting interations = T
for i in range(num_sets):
data_split_train = './data/bupa_train' + str(i) + ".txt"
data_split_test = './data/' + "bupa_test" + str(i) + ".txt"
X_train, Y_train = load_data(data_split_train)
X_test, Y_test = load_data(data_split_test)
score_train, score_test = classifier.run_adaboost(X_train, Y_train, T, X_test)
error_train = calculate_error(T, score_train, Y_train)
error_test = calculate_error(T, score_test, Y_test)
all_errors_train.append(error_train)
all_errors_test.append(error_test)
def adaboost_avg_run_new(max_classes, avg_num_of_run, training_set,
testing_set):
all_error_list = []
# because datasets sometimes place the class attribute at the end or even
# at the beginning or the middle, we'll separate the attribute vector from
# the class-label. also note that this is the way scikit-learn does it.
# train_x: the attribute vector; train_y: the class_label
(train_x, train_y) = split_attribute_and_label(training_set)
(test_x, test_y) = split_attribute_and_label(testing_set)
# print(len(train_x))
train_subset_num = int(len(train_y) * 0.2)
our_ada_training_errors = {}
our_ada_testing_errors = {}
# init dict of num classifier to error list
for i in range(1, max_classes + 1):
our_ada_training_errors[i] = []
our_ada_testing_errors[i] = []
# run ada num_runs times
for i in range(avg_num_of_run):
ada_obj = AdaBoost(max_classes, train_subset_num, THRESHOLD, ETA,
UPPER_BOUND, ETA_WEIGHTS, False)
ada_obj.fit_with_errors(train_x, train_y, test_x, test_y)
for j in range(max_classes):
our_ada_training_errors[j + 1].append(ada_obj.training_error[j])
our_ada_testing_errors[j + 1].append(ada_obj.testing_error[j])
for cl in range(1, max_classes + 1):
scikit_error = []
for i in range(avg_num_of_run):
pada = perceptron.Perceptron(max_iter=UPPER_BOUND,
verbose=0,
random_state=None,
fit_intercept=True,
eta0=ETA)
bdt = AdaBoostClassifier(pada, algorithm="SAMME", n_estimators=cl)
bdt.fit(train_x, train_y)
result_list = bdt.predict(test_x)
scikit_error.append(calculate_error(test_y, result_list))
errors = ErrorWrapper(
cl,
sum(our_ada_training_errors[cl]) /
len(our_ada_training_errors[cl]),
sum(our_ada_testing_errors[cl]) / len(our_ada_testing_errors[cl]),
sum(scikit_error) / len(scikit_error))
all_error_list.append(errors)
print("Train avg for %s %s" % (cl, errors.train_error))
print("Testing avg for %s %s" % (cl, errors.test_error))
print("Scikit adaboost avg for %s %s" % (cl, errors.scikit_error))
return all_error_list
def testBupaData(self):
X, Y = load_bupa_dataset()
classifier = AdaBoost(DecisionStump)
for t in [100, 200, 300, 400, 500]:
score = classifier.test_on_training_set(X, Y, t)
roc = pyroc.ROCData(zip(Y, score))
auc = roc.auc()
print auc
self.failUnless(auc > .9)
def testBupaData(self):
X, Y = load_bupa_dataset()
classifier = AdaBoost(DecisionStump)
for t in [100,200,300,400,500]:
score = classifier.test_on_training_set(X,Y,t)
roc = pyroc.ROCData(zip(Y,score))
auc = roc.auc()
print auc
self.failUnless(auc > .9)
def q_9(self):
tx, ty = ex4_tools.generate_data(5000, noise_ratio=0)
x, y = ex4_tools.generate_data(200, noise_ratio=0)
i = 1
for t in self.ts:
a_boost = AdaBoost(WL=ex4_tools.DecisionStump, T=t)
a_boost.train(tx, ty)
plt.subplot(2, 3, i)
ex4_tools.decision_boundaries(a_boost, x, y, t)
i += 1
plt.show()
def q_10(self):
tx, ty = ex4_tools.generate_data(5000, noise_ratio=0)
x, y = ex4_tools.generate_data(200, noise_ratio=0)
errors = self.get_ab_errors(tx, ty, x, y)
min_t = np.argmin(errors)
a_boost = AdaBoost(WL=ex4_tools.DecisionStump, T=self.ts[min_t])
a_boost.train(tx, ty)
ex4_tools.decision_boundaries(a_boost, tx, ty, self.ts[min_t])
plt.title("min error is " + str(errors[min_t]) + " with " +
str(self.ts[min_t]) + " classifiers")
plt.show()
def Q10():
X, y = generate_data(1000, 0)
T = [5, 10, 50, 100, 200, 500]
i = int(np.argmin(Q9()))
T_min = T[i]
optimal_h = AdaBoost(DecisionStump, T_min)
optimal_h.train(X, y)
decision_boundaries(optimal_h, X, y, T_min)
plt.title('Descision for T=500 that minimizing the test err')
plt.savefig('Q10')
plt.show()
def Q9():
X, y = generate_data(300, 0)
h = AdaBoost(DecisionStump, 500)
h.train(X, y)
err = [0] * len(T)
f = plt.figure(figsize=(10, 10))
for i, t in enumerate(T):
f.add_subplot(3, 2, i + 1)
err[i] = h.error(X, y, t)
decision_boundaries(h, X, y, t)
plt.savefig('Q9')
plt.show()
return np.array(err)
def crossValidateAdaboost(inputFile, outputFile, nIterations):
ticTacToe = TicTacToe(inputFile)
avgEin = np.zeros(nIterations)
avgEout = np.zeros(nIterations)
for k in range(ticTacToe.N_FOLDS):
ticTacToe.createTrainAndTestSets(k)
adaboost = AdaBoost(ticTacToe)
Ein, Eout = adaboost.train(ticTacToe, nIterations)
avgEin = np.sum([avgEin, Ein], axis=0)
avgEout = np.sum([avgEout, Eout], axis=0)
print('--------------------------------------')
return avgEin / ticTacToe.N_FOLDS, avgEout / ticTacToe.N_FOLDS
def adaboost_avg_run(max_classes, avg_num_of_run, training_set, testing_set):
testing_error_list = []
all_error_list = []
# because datasets sometimes place the class attribute at the end or even
# at the beginning or the middle, we'll separate the attribute vector from
# the class-label. also note that this is the way scikit-learn does it.
# train_x: the attribute vector; train_y: the class_label
(train_x, train_y) = split_attribute_and_label(training_set)
(test_x, test_y) = split_attribute_and_label(testing_set)
# print(len(train_x))
train_subset_num = int(len(train_y) * 0.2)
for cl in range(1, max_classes + 1, 2):
train_error = []
testing_error = []
scikit_error = []
for i in range(avg_num_of_run):
ada_obj = AdaBoost(cl, train_subset_num, THRESHOLD, ETA,
UPPER_BOUND, ETA_WEIGHTS, False)
ada_obj.fit(train_x, train_y)
hypothesis_list = ada_obj.predict(train_x)
mistakes = ada_obj.xor_tuples(train_y, hypothesis_list)
error_rate_train = classifier_error_rate(mistakes)
hypothesis_list = ada_obj.predict(test_x)
mistakes = ada_obj.xor_tuples(test_y, hypothesis_list)
error_rate_test = classifier_error_rate(mistakes)
train_error.append(error_rate_train)
testing_error.append(error_rate_test)
pada = perceptron.Perceptron(max_iter=UPPER_BOUND,
verbose=0,
random_state=None,
fit_intercept=True,
eta0=ETA)
bdt = AdaBoostClassifier(pada, algorithm="SAMME", n_estimators=cl)
bdt.fit(train_x, train_y)
result_list = bdt.predict(test_x)
scikit_error.append(calculate_error(test_y, result_list))
errors = ErrorWrapper(cl,
sum(train_error) / len(train_error),
sum(testing_error) / len(testing_error),
sum(scikit_error) / len(scikit_error))
all_error_list.append(errors)
print("Train avg for %s %s" % (cl, errors.train_error))
print("Testing avg for %s %s" % (cl, errors.test_error))
testing_error_list.append(
(sum(testing_error) / len(testing_error)) * 100)
print("Scikit adaboost avg for %s %s" % (cl, errors.scikit_error))
#return testing_error_list
return all_error_list
def main():
classifier = AdaBoost(DecisionStump)
num_sets = 50
T = 100
percentage = 0.9
all_errors_train = []
all_errors_test = []
aver_error_train = []
aver_error_test = []
split_data(percentage, num_sets)
for i in range(num_sets):
data_split_train = './data/bupa_train' + str(i) + ".txt"
data_split_test = './data/' + "bupa_test" + str(i) + ".txt"
X_train, Y_train = load_data(data_split_train)
X_test, Y_test = load_data(data_split_test)
score_train, score_test = classifier.run_adaboost(X_train, Y_train, T, X_test)
error_train = calculate_error(T, score_train, Y_train)
error_test = calculate_error(T, score_test, Y_test)
all_errors_train.append(error_train)
all_errors_test.append(error_test)
# calculates the average errors
for j in range(T):
a_e_train = 0
a_e_test = 0
for i in range(num_sets):
a_e_train += all_errors_train[i][j]
a_e_test += all_errors_test[i][j]
aver_error_train.append(a_e_train/num_sets)
aver_error_test.append(a_e_test/num_sets)
save_result_final(aver_error_train, 'train')
save_result_final(aver_error_test, 'test')
dataset_here = "./data/bupa.data"
X_all, Y_all = load_data(dataset_here)
score_optional = classifier.run_adaboost(X_all, Y_all, T, None, True)
save_result_final(score_optional, 'empirical')
def main():
X_train = np.array([
[1.0, 2.1],
[2.0, 1.1],
[1.3, 1.0],
[1.0, 1.0],
[2.0, 1.0]
])
y_train = np.array([1.0, 1.0, -1.0, -1.0, 1.0]).reshape((-1, 1))
model = AdaBoost(verbose=1)
model.fit(X_train, y_train)
X_test = np.array([
[5, 5],
[0, 0]
])
y_predict = model.predict(X_test)
print('predict result: ', y_predict)
def Q3(): # AdaBoost
path = "/cs/usr/kotek/PycharmProjects/iml_ex4/SynData/"
X_train, y_train = read_from_txt(path + "X_train.txt",
path + "y_train.txt")
X_val, y_val = read_from_txt(path + "X_val.txt", path + "y_val.txt")
X_test, y_test = read_from_txt(path + "X_test.txt", path + "y_test.txt")
# -------- First part --------
T = np.arange(5, 105, step=5)
T = np.append(T, np.array([200]))
training_err = np.zeros(len(T))
validation_err = np.zeros(len(T))
# adaBoost uses a weighted trainer (WL)
WL = ex4_tools.DecisionStump
for i in range(len(T)):
adaboost = AdaBoost(WL, T[i])
adaboost.train(X_train, y_train)
training_err[i] = adaboost.error(X_train, y_train)
validation_err[i] = adaboost.error(X_val, y_val)
plt.plot(T, training_err, label="train error")
plt.plot(T, validation_err, label="validation error")
plt.legend()
plt.show()
# ------------------------
# # -------- Second part --------
decision_T = [1, 5, 10, 100, 200]
plt.figure()
plt.ion()
for idx, t in enumerate(decision_T):
adaboost = AdaBoost(WL, t)
adaboost.train(X_train, y_train)
plt.subplot(2, 3, idx + 1)
ex4_tools.decision_boundaries(adaboost, X_train, y_train,
"T=" + str(t))
plt.show()
plt.pause(5)
def Q3(): # AdaBoost
T = [1,5,10,50,100,200]
T_loop = [1,5,10]
train_err = []
valid_err = []
plt.figure("decisions of the learned classifiers for T")
num_graph = 0
for i in range(3,41):
T_loop.append(i*5)
for t in T_loop:
ada_boost = AdaBoost(DecisionStump, t)
ada_boost.train(x_train, y_train)
if (t in T):
num_graph += 1
plt.subplot(3,2, num_graph)
decision_boundaries(ada_boost, x_train, y_train, "T = %d" %t)
train_err.append(ada_boost.error(x_train, y_train))
valid_err.append(ada_boost.error(x_val, y_val))
plt.figure("training error and the validation error")
plt.plot(T_loop, train_err, 'ro-', hold=False, label= "Training Error")
plt.plot(T_loop, valid_err, 'go-', label= "Validation Error")
plt.legend()
plt.show()
'''
find the T min, and plot it with training error
'''
plt.figure("decision boundaries of T min, with the training data")
T_hat = 5 * np.argmin(valid_err)
ada_boost = AdaBoost(DecisionStump, T_hat)
ada_boost.train(x_train, y_train)
test_err = ada_boost.error(x_test, y_test)
decision_boundaries(ada_boost, x_train, y_train, "T = %d" %T_hat)
plt.show()
print ("The value of T that minimizes the validation error is: ", T_hat)
print("the test error of the corresponding classifier is: ", test_err)
return
def Q3(): # AdaBoost
print("Q3")
print("===============================================")
T = [None]*41
T[0] = 1
for i in range(5, 201, 5):
T[i//5] = i
classifiers = [None]*41
train_err = [None]*41
val_err = [None]*41
for i in range(len(T)):
classifiers[i] = AdaBoost(DecisionStump, T[i])
classifiers[i].train(X_train, y_train)
train_err[i] = classifiers[i].error(X_train, y_train)
val_err[i] = classifiers[i].error(X_val, y_val)
plt.figure(1)
plt.subplot(3, 2, 1)
decision_boundaries(classifiers[0], X_train, y_train, "Training Classification T=1")
plt.subplot(3, 2, 2)
decision_boundaries(classifiers[1], X_train, y_train, "Training Classification T=5")
plt.subplot(3, 2, 3)
decision_boundaries(classifiers[2], X_train, y_train, "Training Classification T=10")
plt.subplot(3, 2, 4)
decision_boundaries(classifiers[10], X_train, y_train, "Training Classification T=50")
plt.subplot(3, 2, 5)
decision_boundaries(classifiers[20], X_train, y_train, "Training Classification T=100")
plt.subplot(3, 2, 6)
decision_boundaries(classifiers[40], X_train, y_train, "Training Classification T=200")
plt.show()
plt.figure(2)
red_patch = mpatches.Patch(color='red', label='Training')
b_patch = mpatches.Patch(color='blue', label='Validation')
plt.legend(handles=[red_patch, b_patch])
plt.plot(T, train_err, 'r', T, val_err, 'b')
plt.title("Training Error and Validation Error ")
plt.show()
T_hat = T[np.argmin(val_err)]
print("the value of T_hat (T that minimize validation error) is:", T_hat) #55
print("the test error of T_hat is:", classifiers[T_hat//5].error(X_test, y_test)) #0.184
plt.figure(3)
decision_boundaries(classifiers[T_hat//5], X_train, y_train, "Training Classification of T_hat")
plt.show()
print("===============================================")
return
def select_classifier(cname, features=None, labels=None, **kwargs):
if 'svm'.startswith(cname):
del kwargs['class_weight']
c = SVC(probability=True, **kwargs)
elif 'logistic-regression'.startswith(cname):
c = LogisticRegression()
elif 'linear-regression'.startswith(cname):
c = LinearRegression()
elif 'random-forest'.startswith(cname):
try:
c = RandomForest()
except NameError:
logging.warning(' Tried to use random forest, but not available.' +
' Falling back on adaboost.')
cname = 'ada'
if 'adaboost'.startswith(cname):
c = AdaBoost(**kwargs)
if features is not None and labels is not None:
c = c.fit(features, labels, **kwargs)
return c
def train(self):
raise ("Unfinished")
detection_rate = 0
from config import EXPECTED_FPR_PRE_LAYYER
from config import EXPECTED_FPR
from config import LABEL_NEGATIVE
cur_fpr = 1.0
mat = self._mat
label = self._label
for i in xrange(self.limit):
if cur_fpr < EXPECTED_FPR:
break
else:
cache_filename = ADABOOST_CACHE_FILE + str(i)
if os.path.isfile(cache_filename):
self.strong_classifier[i] = getCachedAdaBoost(
mat=self._mat,
label=self._label,
filename=cache_filename,
limit=ADABOOST_LIMIT)
else:
self.strong_classifier[i] = AdaBoost(mat,
label,
limit=ADABOOST_LIMIT)
output, fpr = self.strong_classifier[i].train()
cur_fpr *= fpr
fp_num = fpr * numpy.count_nonzero(label == LABEL_NEGATIVE)
self.strong_classifier[i].saveModel(cache_filename)
mat, label = self.updateTrainingDate(mat, output, fp_num)
self.classifierNum += 1
def Q_adaboost(noise_ratio):
X_train, y_train = generate_data(5000, noise_ratio)
classifier = AdaBoost(DecisionStump, 500)
classifier.train(X_train, y_train)
X_test, y_test = generate_data(200, noise_ratio)
vals = np.arange(1, 501)
plt.plot(vals, [classifier.error(X_train, y_train, t) for t in vals],
label='Training Error',
lw=1,
alpha=0.6)
plt.plot(vals, [classifier.error(X_test, y_test, t) for t in vals],
label='Test Error',
lw=1,
alpha=0.6)
plt.legend()
plt.title(
f'Adaboost Training & Test Error according to T, noise={noise_ratio}')
plt.show()
boosts = [5, 10, 50, 100, 200, 500]
for i in range(6):
plt.subplot(2, 3, i + 1)
decision_boundaries(classifier, X_test, y_test, boosts[i])
plt.title(f'T={boosts[i]}, noise={noise_ratio}')
plt.show()
test_errors = [classifier.error(X_test, y_test, t) for t in vals]
min_t = np.argmin(test_errors)
min_err = test_errors[min_t]
# print(min_t, min_err)
decision_boundaries(classifier, X_train, y_train, min_t)
plt.title(f'min test_err {min_err} T={min_t} noise {noise_ratio}')
plt.show()
decision_boundaries(classifier, X_train, y_train, 499,
classifier.D_of_last_iteration)
plt.title(f'un-normalized weighed sample T=500, noise={noise_ratio}')
plt.show()
decision_boundaries(
classifier, X_train, y_train, 499, classifier.D_of_last_iteration /
np.max(classifier.D_of_last_iteration) * 100)
plt.title(f'normalized weighed sample T=500, noise={noise_ratio}')
plt.show()
def Q8():
X, y = generate_data(5000, 0)
h = AdaBoost(DecisionStump, 500)
h.train(X, y)
training_err = np.zeros((500, ))
test_err = np.zeros((500, ))
test_set, labels = generate_data(200, 0)
for t in range(1, 501):
training_err[t - 1] = h.error(X, y, t)
test_err[t - 1] = h.error(test_set, labels, t)
plt.plot(range(500), training_err, label='Training error')
plt.plot(range(500), test_err, label='Test error')
plt.title('question 8')
plt.legend(loc='upper right')
plt.xlabel('T')
plt.ylabel('Error rate')
plt.savefig('Q8')
plt.show()
def Q17():
train_images, test_images, train_labels, test_labels = load_images(
'../Docs/')
train_images = integral_image(train_images)
test_images = integral_image(test_images)
WL, T = WeakImageClassifier, 50
ada = AdaBoost(WL, T)
ada.train(train_images, train_labels)
T_range = np.arange(1, T)
train_errs = [ada.error(train_images, train_labels, t) for t in T_range]
test_errs = [ada.error(test_images, test_labels, t) for t in T_range]
fig = plt.figure()
fig.suptitle("Train vs Test error, Face Classifier")
plt.xlabel('# of Hypotheses (T)')
plt.ylabel('Error rate (%)')
plt.plot(T_range, train_errs, label='Train Error')
plt.plot(T_range, test_errs, label='Test Error')
# plt.ylim(top=0.06)
plt.legend()
plt.savefig(FIG_DIR3 + 'q17')
'TODO complete this function'
def Q8(noise=0.0):
n_samples_train, n_samples_test, T = 5000, 200, 500
train_X, train_y = generate_data(n_samples_train, noise)
test_X, test_y = generate_data(n_samples_test, noise)
WL = DecisionStump
ada = AdaBoost(WL, T)
ada.train(train_X, train_y)
T_range = np.arange(1, T)
train_errs = [ada.error(train_X, train_y, t) for t in T_range]
test_errs = [ada.error(test_X, test_y, t) for t in T_range]
fig = plt.figure()
fig.suptitle("Train vs Test error, Adaboost")
plt.xlabel('# of Hypotheses (T)')
plt.ylabel('Error rate (%)')
plt.plot(T_range, train_errs, label='Train Error')
plt.plot(T_range, test_errs, label='Test Error')
# plt.ylim(top=0.06)
plt.legend()
plt.savefig(FIG_DIR3 + 'q8' +
('' if noise == 0 else '_' + str(noise).replace('.', '_')))
return ada, test_X, test_y, train_X, train_y
'TODO complete this function'
for j in range(i * TESTING_SAMPLE_NUM, (i+1) * TESTING_SAMPLE_NUM):
haarGroup.append(float(tmp[j]))
Original_Data.append(haarGroup)
Original_Data = numpy.array(Original_Data)
fileObj.close()
fileObj = open(ADABOOST_FILE, "a+")
print "Constructing AdaBoost from existed model data"
tmp = fileObj.readlines()
a = AdaBoost(train = False)
for i in range(0, len(tmp), 4):
alpha, demention, label, threshold = None, None, None, None
for j in range(i, i + 4):
if (j % 4) == 0:
alpha = float(tmp[j])
elif (j % 4) == 1:
demention = int(tmp[j])
elif (j % 4) == 2:
label = float(tmp[j])
elif (j % 4) == 3:
threshold = float(tmp[j])
from mapReduce import reduce
map(Face, nonFace)
_mat = reduce()
mat = _mat
featureNum, sampleNum = _mat.shape
assert sampleNum == (POSITIVE_SAMPLE + NEGATIVE_SAMPLE)
assert featureNum == FEATURE_NUM
Label_Face = [+1 for i in xrange(POSITIVE_SAMPLE)]
Label_NonFace = [-1 for i in xrange(NEGATIVE_SAMPLE)]
label = numpy.array(Label_Face + Label_NonFace)
cache_filename = ADABOOST_CACHE_FILE + str(0)
if os.path.isfile(cache_filename):
model = getCachedAdaBoost(mat = _mat,
label = label,
filename= cache_filename,
limit = ADABOOST_LIMIT)
else:
model = AdaBoost(mat, label, limit = ADABOOST_LIMIT)
model.train()
model.saveModel(cache_filename)
print model
def ab_plot(iterate):
fig, axes = plt.subplots(2, 2)
# fig.set_size_inches(10, 10)
for ax in axes.flatten():
n_ex = 100
n_trees = 50
n_feats = np.random.randint(2, 100)
max_depth_d = 1 #np.random.randint(1, 100)
classifier = np.random.choice([True]) #, False
if classifier:
# create classification problem
n_classes = np.random.randint(2, 10)
X, Y = make_blobs(n_samples=n_ex, centers=n_classes, n_features=2)
X, X_test, Y, Y_test = train_test_split(X, Y, test_size=0.3)
n_feats = min(n_feats, X.shape[1])
# initialize model
def loss(yp, y):
return accuracy_score(yp, y)
# initialize model
criterion = np.random.choice(["entropy", "gini"])
mine_g = AdaBoost(
n_iter=iterate,
max_depth=max_depth_d,
classifier=classifier,
# learning_rate=1,
# loss="crossentropy",
# step_size="constant",
# split_criterion=criterion,
)
else:
# create regeression problem
X, Y = make_regression(n_samples=n_ex, n_features=1)
X, X_test, Y, Y_test = train_test_split(X, Y, test_size=0.3)
n_feats = min(n_feats, X.shape[1])
# initialize model
criterion = "mse"
loss = mean_squared_error
mine_g = GradientBoostedDecisionTree(
n_iter=iterate,
# n_trees=n_trees,
max_depth=max_depth_d,
classifier=classifier,
learning_rate=1,
loss="mse",
step_size="adaptive",
split_criterion=criterion,
)
# fit 'em
mine_g.fit(X, Y)
# # get preds on test set
# y_pred_mine_test_g = mine_g.predict(X_test)
#
# loss_mine_test_g = loss(y_pred_mine_test_g, Y_test)
#
# if classifier:
# entries = [
# ("GB", loss_mine_test_g, y_pred_mine_test_g)
# ]
# (lbl, test_loss, preds) = entries[np.random.randint(1)]
# ax.set_title("{} Accuracy: {:.2f}%".format(lbl, test_loss * 100))
# for i in np.unique(Y_test):
# ax.scatter(
# X_test[preds == i, 0].flatten(),
# X_test[preds == i, 1].flatten(),
# # s=0.5,
# )
# else:
# X_ax = np.linspace(
# np.min(X_test.flatten()) - 1, np.max(X_test.flatten()) + 1, 100
# ).reshape(-1, 1)
# y_pred_mine_test_g = mine_g.predict(X_ax)
#
# ax.scatter(X_test.flatten(), Y_test.flatten(), c="b", alpha=0.5)
# # s=0.5)
# ax.plot(
# X_ax.flatten(),
# y_pred_mine_test_g.flatten(),
# # linewidth=0.5,
# label="GB".format(n_trees, n_feats, max_depth_d),
# color="red",
# )
# ax.set_title(
# "GB: {:.1f}".format(
# loss_mine_test_g
# )
# )
# ax.legend()
# ax.xaxis.set_ticklabels([])
# ax.yaxis.set_ticklabels([])
# plt.savefig("plot.png", dpi=300)
plt.show()
Just Enjoy it.
"""
import numpy
import matplotlib.pyplot as pyplot
from adaboost import AdaBoost
from sklearn import datasets
"""
Samples for AdaBoost
"""
Original_Data, Tag = datasets.make_hastie_10_2(n_samples = 200,
random_state = 1)
Original_Data = Original_Data.transpose()
for i in range(len(Tag)):
if Tag[i] == 1:
pyplot.plot(Original_Data[0][i], Original_Data[1][i], \
'+r', markersize = 10)
else:
pyplot.plot(Original_Data[0][i], Original_Data[1][i], \
'+b', markersize = 10)
pyplot.title("Sample Points")
pyplot.show()
a = AdaBoost(Original_Data, Tag)
a.train(10000)
def main():
''' Load data, split data, creates adaboost algorithm
with decision stump, calculates errors, save final file.
Since this is a binary classifier, we will do for each of the
4 networks, one at time'''
classification = []
ada_folder = OUTPUT_FOLDER + 'adaboost/'
if not os.path.exists(ada_folder):
os.makedirs(ada_folder)
output_file = ada_folder + 'results.out'
with open(output_file, "w") as f:
f.write("# ADABOOST RESULTS, TRAIN/TEST FRACTION: " + str(PERCENTAGE) + "\n")
f. write("# Net Norm Set OL? Accu. Train Accu Test\n")
# chose classifier
classifier = AdaBoost(DecisionStump)
# for each normalization:
for norm in NORM:
# for each set
for number in range(1, NUM_SETS+1):
''' with with_outlier '''
with_outlier = True
# get input and output file paths
input_train = get_input_data('train', number, norm, with_outlier)
input_test = get_input_data('test', number, norm, with_outlier)
# for each network type:
for net_name in NET_NAMES:
# get data
X_train, Y_train = one_against_all.load_data(input_train, net_name)
X_test, Y_test = one_against_all.load_data(input_test, net_name)
print 'Calculating adaboost for net ' + net_name + ' with normalization ' + norm + ' and set ' + str(number)
score_train, score_test = classifier.run_adaboost(X_train, Y_train, T, X_test)
error_train = calculate_error(T, score_train, Y_train)
error_test = calculate_error(T, score_test, Y_test)
error_train_total = sum(error_train)/len(error_train)
error_test_total = sum(error_test)/len(error_test)
save_result_final(error_train_total, error_test_total, output_file, net_name, norm, number, with_outlier)
classification.append(str(round(error_test_total,3)) +', ' + str(norm) + ', ' + str(number) + ', ' + str(with_outlier)[0] + '\n')
''' with no outlier '''
with_outlier = False
# get input and output file paths
input_train = get_input_data('train', number, norm, with_outlier)
input_test = get_input_data('test', number, norm, with_outlier)
# for each network type:
for net_name in NET_NAMES:
# get data
X_train, Y_train = one_against_all.load_data(input_train, net_name)
X_test, Y_test = one_against_all.load_data(input_test, net_name)
score_train, score_test = classifier.run_adaboost(X_train, Y_train, T, X_test)
error_train = calculate_error(T, score_train, Y_train)
error_test = calculate_error(T, score_test, Y_test)
error_train_total = sum(error_train)/len(error_train)
error_test_total = sum(error_test)/len(error_test)
save_result_final(error_train_total, error_test_total, output_file, net_name, norm, number, with_outlier)
classification.append(str(round(error_test_total,3)) +', ' + str(norm) + ', ' + str(number) + ', ' + str(with_outlier)[0] + '\n')
#find best classfiers
classification.sort()
with open(output_file + 'good_classification', "w") as f:
f.write("\n\n\nClassification\n\n")
for feat in classification:
f.write(feat + '\n')
f.write("\n")
print 'Results saved at ' + ada_folder
print 'Done!!!'
[-1], [-1], [+1], [+1], [+1], [+1], [+1], [+1], [+1], [+1],
[+1], [+1], [+1], [+1], [+1], [+1], [+1], [+1], [+1], [+1],
[+1], [+1], [+1], [-1], [-1], [-1], [-1], [-1], [-1], [-1],
[-1], [-1], [-1], [+1], [+1], [+1]]).transpose()
Tag = Tag.flatten()
for i in range(len(Tag)):
if Tag[i] == 1:
pyplot.plot(Original_Data[0][i], Original_Data[1][i], \
'+r', markersize = 10)
else:
pyplot.plot(Original_Data[0][i], Original_Data[1][i], \
'+b', markersize = 10)
a = AdaBoost(Original_Data, Tag)
a.train(100)
TestCase = [[0.55, 1.1, 5.35, 7.0, 8.5, -1.0, 3.0, 3.0, 4.0, 2, 3],
[4.4, 2.8, 0.9, -12, -13, -9, -10, -9, -5, 0, 2.5]]
output = a.prediction(TestCase)
for i in range(len(output)):
if output[i] == 1:
pyplot.plot(TestCase[0][i], TestCase[1][i], \
'or', markersize = 20)
else:
pyplot.plot(TestCase[0][i], TestCase[1][i], \
'ob', markersize = 20)
[1], [2], [3], [4], [5], [6], [7], [8], [9] ]).transpose() Tag = numpy.array([ [+1], [+1], [+1], [-1], [-1], [-1], [+1], [+1], [+1], [-1], ]).transpose() Tag = Tag.flatten() a = AdaBoost(Original_Data, Tag) a.train(5)
(i + 1) * TESTING_SAMPLE_NUM):
haarGroup.append(float(tmp[j]))
Original_Data.append(haarGroup)
Original_Data = numpy.array(Original_Data)
fileObj.close()
fileObj = open(ADABOOST_FILE, "a+")
print "Constructing AdaBoost from existed model data"
tmp = fileObj.readlines()
a = AdaBoost(train=False)
for i in range(0, len(tmp), 4):
alpha, demention, label, threshold = None, None, None, None
for j in range(i, i + 4):
if (j % 4) == 0:
alpha = float(tmp[j])
elif (j % 4) == 1:
demention = int(tmp[j])
elif (j % 4) == 2:
label = float(tmp[j])
elif (j % 4) == 3:
threshold = float(tmp[j])
def do_adaboost(self):
if self.flag == 0:
start = time.time()
adaboost_instance = AdaBoost(self.train)
adaboost_instance.create_and_train_classifiers()
adaboost_instance.write_model(self.model_file)
end = time.time()
print 'Training Time :', (end - start) / 60, 'mins'
else:
start = time.time()
adaboost_instance = AdaBoost(None)
adaboost_instance.load_model(self.model_file)
test_output = adaboost_instance.test(self.test, self.output_file)
print test_output['accuracy'], '%'
end = time.time()
print 'Testing Time :', (end - start) / 60, 'mins'
def _load_data(name):
return np.loadtxt(_get_file_path('X_' + name)), np.loadtxt(
_get_file_path('y_' + name))
if __name__ == '__main__':
X_train, y_train = _load_data('train')
X_val, y_val = _load_data('val')
T_values = range(5, 200, 5)
validation_error = []
training_error = []
for t in T_values:
ada_boost = AdaBoost(DecisionStump, t)
ada_boost.train(X_train, y_train)
validation_error.append(ada_boost.error(X_val, y_val))
training_error.append(ada_boost.error(X_train, y_train))
training_error_plot, = plot(T_values,
training_error,
linestyle='--',
label='training_error')
validation_error_plot, = plot(T_values,
validation_error,
linestyle='--',
label='validation_error')
legend(handles=[training_error_plot, validation_error_plot])
for j in range(i * SAMPLE_NUM , (i+1) * SAMPLE_NUM):
haarGroup.append(float(tmp[j]))
Original_Data.append(haarGroup)
Original_Data = numpy.array(Original_Data)
fileObj.close()
SampleDem = Original_Data.shape[0]
SampleNum = Original_Data.shape[1]
assert SampleNum == (POSITIVE_SAMPLE + NEGATIVE_SAMPLE)
Label_Face = [+1 for i in range(POSITIVE_SAMPLE)]
Label_NonFace = [-1 for i in range(NEGATIVE_SAMPLE)]
Label = numpy.array(Label_Face + Label_NonFace)
a = AdaBoost(Original_Data, Label)
try:
a.train(200)
except KeyboardInterrupt:
print "You pressed interrupt key. Training process interrupt."
saveModel(a)
[+1],
[+1],
[+1],
]
).transpose()
Tag = Tag.flatten()
for i in range(len(Tag)):
if Tag[i] == 1:
pyplot.plot(Original_Data[0][i], Original_Data[1][i], "+r", markersize=10)
else:
pyplot.plot(Original_Data[0][i], Original_Data[1][i], "+b", markersize=10)
a = AdaBoost(Original_Data, Tag)
a.train(100)
TestCase = [[0.55, 1.1, 5.35], [4.4, 2.8, 0.9]]
output = a.prediction(TestCase)
for i in range(len(output)):
if output[i] == 1:
pyplot.plot(TestCase[0][i], TestCase[1][i], "or", markersize=20)
else:
pyplot.plot(TestCase[0][i], TestCase[1][i], "ob", markersize=20)
pyplot.show()
def Q6(): # Republican or Democrat?
print("Q6")
print("===============================================")
votes_tmp = np.column_stack((votes, parties))
training_votes, val_votes, test_votes = np.vsplit(votes_tmp[np.random.permutation(votes_tmp.shape[0])],(217,391))
training_parties = training_votes[:, 16]
training_votes = np.delete(training_votes, np.s_[16:17], axis=1)
val_parties = val_votes[:, 16]
val_votes = np.delete(val_votes, np.s_[16:17], axis=1)
test_parties = test_votes[:, 16]
test_votes = np.delete(test_votes, np.s_[16:17], axis=1)
adaboost_classifiers = [None]*5
dtree_classifiers = [None]*5
knn_classifiers = [None]*5
adaboost_val_err = [None]*5
dtree_val_err = [None]*5
knn_val_err = [None]*5
T = [1, 25, 50, 100, 200]
k = [1, 5, 25, 100, 200]
d = [1, 5, 10, 16, 20]
for i in range(5):
dtree_classifiers[i] = DecisionTree(d[i])
dtree_classifiers[i].train(training_votes, training_parties)
dtree_val_err[i] = dtree_classifiers[i].error(val_votes, val_parties)
adaboost_classifiers[i] = AdaBoost(DecisionStump, T[i])
adaboost_classifiers[i].train(training_votes, training_parties)
adaboost_val_err[i] = adaboost_classifiers[i].error(val_votes, val_parties)
knn_classifiers[i] = kNN(k[i])
knn_classifiers[i].train(training_votes, training_parties)
knn_val_err[i] = knn_classifiers[i].error(val_votes, val_parties)
"""
explanation for choosing the parameters for each classifier: I trained some classifiers of each type
with different parameters and then measured the validation error with the validation sample.
then,as I did in previous tasks, I chose the parameter that minimize the validation error over
the sample and used the classifiers with this parameter to measure the test error.
here is plots with validation error of each classifier over some parameters:
"""
plt.figure(1)
plt.subplot(3, 1, 1)
plt.plot(d, dtree_val_err)
plt.title("Validation Error of Decision Tree")
plt.subplot(3, 1, 2)
plt.plot(T, adaboost_val_err)
plt.title("Validation Error of Adaboost")
plt.subplot(3, 1, 3)
plt.plot(k, knn_val_err)
plt.title("Validation Error of k Nearest Neighbors")
plt.show()
d_hat = d[np.argmin(dtree_val_err)]
T_hat = T[np.argmin(adaboost_val_err)]
k_hat = k[np.argmin(knn_val_err)]
print("Decision Tree: the optimal validation error is: ", dtree_val_err[d.index(d_hat)],
" , and the optimal test error is: ", dtree_classifiers[d.index(d_hat)].error(test_votes, test_parties))
print("Adaboost: the optimal validation error is: ", adaboost_val_err[T.index(T_hat)],
" , and the optimal test error is: ", adaboost_classifiers[T.index(T_hat)].error(test_votes, test_parties))
print("k Nearest Neighbors: the optimal validation error is: ", knn_val_err[k.index(k_hat)],
" , and the optimal test error is: ", knn_classifiers[k.index(k_hat)].error(test_votes, test_parties))
#optional
dtree1 = DecisionTree(3)
dtree1.train(votes[:10, :], parties[:10])
view_dtree(dtree1, feature_names, class_names)
dtree2 = DecisionTree(6)
dtree2.train(votes[:150, :], parties[:150])
view_dtree(dtree2, feature_names, class_names)
dtree3 = DecisionTree(10)
dtree3.train(votes, parties)
view_dtree(dtree3, feature_names, class_names)
print("===============================================")
return
