def teardown(self):
timer = Timer()
timer.start("Teardown")
for project in self.working_projects:
print("Cleaning up working project %s..." % (project.get_uuid()))
self.projects.delete_project(project.get_uuid())
timer.stop()
def new_working_project(self, project_name=None):
"""Creates a new project under the root project (workspace) in the ADAM configuration.
Args:
project_name (str): The name for the new project (optional).
Returns:
Project: the newly created project, or None, if there is no configured root project.
"""
timer = Timer()
timer.start(
f"Create a new working project under project {self.project}")
if self.project:
project = self.projects.new_project(
self.project, project_name,
"Test project created at " + str(datetime.datetime.now()))
self.working_projects.append(project)
print("Set up project with uuid " + project.get_uuid())
timer.stop()
return project
else:
print(
"A root project must be configured in order to use other working projects "
+ "(which live under the root project).")
timer.stop()
return None
def setup(self, url, token, parent_project = None):
timer = Timer()
timer.start("Setup")
self.parent_project = parent_project
rest = RestRequests(url)
self.auth = Auth(rest)
if not self.auth.authorize(token):
# Try one more time, since often the error is a session expired error and
# seems to work fine on the second try.
print("Encountered error, retrying authorization")
if not self.auth.authorize(token):
timer.stop()
return False
self.rest = AuthorizingRestProxy(rest, self.auth.get_token())
self.projects = Projects(self.rest)
self.batches = Batches(self.rest)
self.groups = Groups(self.rest)
self.permissions = Permissions(self.rest)
# Also sets up a project to work in.
self.project = self.projects.new_project(parent_project, None,
"Test project created at " + str(datetime.datetime.now()))
print("Set up project with uuid " + self.project.get_uuid())
timer.stop()
return True
def teardown(self):
"""Delete all working projects that were created in this Jupyter session."""
timer = Timer()
timer.start("Teardown")
for project in self.working_projects:
print("Cleaning up working project %s..." % (project.get_uuid()))
self.projects.delete_project(project.get_uuid())
timer.stop()
def new_working_project(self):
timer = Timer()
timer.start("Generate working project")
if self.config.get_workspace() != '':
project = self.projects.new_project(
self.config.get_workspace(), None,
"Test project created at " + str(datetime.datetime.now()))
self.working_projects.append(project)
print("Set up project with uuid " + project.get_uuid())
timer.stop()
return project
else:
print("Workspace must be configured in order to use working projects " +
"(which live in the workspace).")
timer.stop()
return None
def setup(self):
timer = Timer()
timer.start("Setup")
rest = RetryingRestProxy(RestRequests(self.config.get_url()))
auth = Auth(rest)
if not auth.authenticate(self.config.get_token()):
print("Could not authenticate.")
return False
self.rest = AuthenticatingRestProxy(rest, self.config.get_token())
self.projects = Projects(self.rest)
self.batches = Batches(self.rest)
self.groups = Groups(self.rest)
self.permissions = Permissions(self.rest)
timer.stop()
return True
def setup(self):
timer = Timer()
timer.start("Setup")
rest = RetryingRestProxy(RestRequests(self.url))
auth = Auth(rest)
if not auth.authenticate(self.token):
print("Could not authenticate.")
return False
self.rest = AuthenticatingRestProxy(rest, self.token)
self.projects = Projects(self.rest)
self.batches = Batches(self.rest)
self.groups = Groups(self.rest)
self.permissions = Permissions(self.rest)
self.processing_service = AdamProcessingService(self.rest)
timer.stop()
return True
def setup(self):
"""Sets up the API client and modules for issuing requests to the ADAM API."""
timer = Timer()
timer.start("Setup")
retrying_rest = RetryingRestProxy(RestRequests())
self.rest = AuthenticatingRestProxy(retrying_rest)
auth = Auth(self.rest)
if not auth.authenticate():
print("Could not authenticate.")
return False
self.projects = ProjectsClient(self.rest)
self.batches = Batches(self.rest)
self.groups = Groups(self.rest)
self.permissions = Permissions(self.rest)
self.processing_service = AdamProcessingService(self.rest)
timer.stop()
return True
class BatchRunManager(object):
"""
Class for managing the state and propagation of a set of batch propagations.
Responsible for submitting them, tracking and exposing their status during
propagation, and retrieving their results.
WARNING: this module is not thread-safe. The only supported simultaneous operation
is calling get_latest_statuses() while a call to run() is ongoing.
"""
def __init__(self,
batches_module,
batch_runs,
do_timing=True,
multi_threaded=True):
"""Sets up object that can manage the running and lifetime of the given batches.
Args:
batches_module (Batches): Object to use to communicate with server.
batch_runs (list<Batch2>): Batches to be run/managed.
do_timing (boolean): If true, timing information will be printed for various
parts of batch lifetime (submission, running, results retrieval).
multi_threaded (boolean): If true, operations that would benefit from
multithreading such as submission or results retrieval will be
multithreaded. Should generally be left true, but can be set to false if
a guaranteed particular ordering is necessary (e.g. for tests).
"""
self.batches_module = batches_module
# Store the batch runs and check that they all belong to the same project.
self.batch_runs = batch_runs
projects = set([
b.get_propagation_params().get_project_uuid() for b in batch_runs
])
if len(projects) != 1:
print(
"All batches must belong to the same project to use the batch run manager"
)
return
self.project = projects.pop()
self.state = State.INITIALIZED
self.do_timing = do_timing
if self.do_timing:
self.timer = Timer()
self.multi_threaded = multi_threaded
# Cache the overall status here. Lock access so that state can be retrieved while
# waiting for completion.
self.cached_status = self._get_empty_cached_status()
self.status_lock = threading.Lock()
def __repr__(self):
return "Batch run manager [%s: %s batches]" % (self.state,
len(self.batch_runs))
def get_batch_runs(self):
""" Retrieves the batch runs managed by this object. Not safe to call while
any other call is ongoing.
"""
return self.batch_runs
def get_latest_statuses(self):
""" Retrieves the latest state of all batches managed by this object.
Safe to call while a call to update_state(), wait_for_completion()
or run() is ongoing.
"""
self.status_lock.acquire()
status = copy.deepcopy(self.cached_status)
self.status_lock.release()
return status
def _get_empty_cached_status(self):
return {'PENDING': [], 'RUNNING': [], 'COMPLETED': [], 'FAILED': []}
def _update_cached_status(self):
status = self._get_empty_cached_status()
for b in self.batch_runs:
status[b.get_calc_state()].append(b.get_uuid())
self.status_lock.acquire()
self.cached_status = status
self.status_lock.release()
def _submit(self):
if self.do_timing:
self.timer.start("Submitting %s runs." % (len(self.batch_runs)))
if not self.state == State.INITIALIZED:
print("Error: runs already submitted, cannot resubmit.")
self.timer.stop()
return
# Batch runs are most efficient when submitted in a single call because of the
# overhead of authorization, connecting to the database, etc. The server takes
# ~20 seconds to submit 500 batch runs. We don't want to take more time than that
# because calls time out around 60 seconds.
submission_batch_size = 500
# Use as many threads as we have batches to submit, up to an arbitrary maximum
# of 10, which allows us to submit 5000 batches in parallel.
if self.multi_threaded:
num_batches = round(
len(self.batch_runs) / submission_batch_size) + 1
threads = min(num_batches, 10)
else:
threads = 1
def _submit_batches(i):
# Grab all the creation parameters from the batch objects.
runs = self.batch_runs[i:i + submission_batch_size]
params = [[b.get_propagation_params(),
b.get_opm_params()] for b in runs]
# Call to the server to create the batches.
summaries = self.batches_module.new_batches(params)
# Update the batches with the resulting state summaries.
for summary_i in range(len(summaries)):
self.batch_runs[i + summary_i].set_state_summary(
summaries[summary_i])
pool = ThreadPool(threads)
# Break up the batches into chunks and submit them in chunks. For fewer than
# <submission_batch_size> runs, this just submits them all in one request on one
# thread.
pool.map(
_submit_batches,
[i for i in range(0, len(self.batch_runs), submission_batch_size)])
pool.close()
pool.join()
self._update_cached_status()
if self.do_timing:
self.timer.stop()
self.state = State.SUBMITTED
def _update_state(self):
""" Updates the state of all batch runs managed by this object. When finished
updating batch run state, sets the state of this object to COMPLETED if all
managed runs are in a final state (COMPLETED or FAILED).
"""
if self.state == State.INITIALIZED:
print("Error: runs not yet submitted, no state to retrieve")
return
elif self.state == State.COMPLETED:
# No update is necessary, since nothing changes once the state is COMPLETED.
return
# First, update the status of all batches.
summaries_by_uuid = self.batches_module.get_summaries(self.project)
for batch in self.batch_runs:
batch.set_state_summary(summaries_by_uuid[batch.get_uuid()])
# Then, if the state of this whole batch should be updated, do that.
complete = True
for b in self.batch_runs:
if not b.get_calc_state() in ['COMPLETED', 'FAILED']:
complete = False
break
if complete:
self.state = State.COMPLETED
self._update_cached_status()
def _wait_for_completion(self):
""" Waits for the completion of all the batches managed by this object. When this
returns, all managed batches are guaranteed to be in a final state
(COMPLETED or FAILED).
"""
if self.do_timing:
self.timer.start("Running.")
while self.state != State.COMPLETED:
self._update_state()
if self.do_timing:
self.timer.stop()
def _get_results(self):
if self.do_timing:
self.timer.start("Retrieving propagation results.")
def _get_results(i):
b = self.batch_runs[i]
results = self.batches_module.get_propagation_results(
b.get_state_summary())
b.set_results(results)
if self.multi_threaded:
threads = 5
else:
threads = 1
pool = ThreadPool(threads)
pool.map(_get_results, [i for i in range(len(self.batch_runs))])
pool.close()
pool.join()
if self.do_timing:
self.timer.stop()
def run(self):
self._submit()
self._wait_for_completion()
self._get_results()
class RunnableManager(object):
"""
Class for managing the state of a set of runnables.
Responsible for submitting them, tracking and exposing their status during
propagation, and retrieving their results.
WARNING: this module is not thread-safe. The only supported simultaneous operation
is calling get_latest_statuses() while a call to run() is ongoing.
"""
def __init__(self,
runnables_module,
runnables,
project_uuid,
do_timing=True,
multi_threaded=True):
"""Sets up object that can manage the running and lifetime of the given batches.
Args:
runnables_module: Object to use to communicate with server. Should be subclass of
AdamObjects and should implement create, get, and update_with_results.
runnables (list<object>): Runnable objects to be run/managed. Should implement get_uuid.
project_uuid (string): The uuid of the project in which these runnables should be run.
do_timing (boolean): If true, timing information will be printed for various
parts of batch lifetime (submission, running, results retrieval).
multi_threaded (boolean): If true, operations that would benefit from
multithreading such as submission or results retrieval will be
multithreaded. Should generally be left true, but can be set to false if
a guaranteed particular ordering is necessary (e.g. for tests).
"""
self.runnables_module = runnables_module
self.runnables = runnables
self.project_uuid = project_uuid
self.state = State.INITIALIZED
self.do_timing = do_timing
if self.do_timing:
self.timer = Timer()
self.multi_threaded = multi_threaded
# Cache the overall status here. Lock access so that state can be retrieved while
# waiting for completion.
self.cached_status = self._get_empty_cached_status()
self.status_lock = threading.Lock()
def __repr__(self):
return "Runnable manager [%s: %s runnables]" % (self.state,
len(self.runnables))
def get_runnables(self):
""" Retrieves the runnables managed by this object. Not safe to call while
any other call is ongoing.
"""
return self.runnables
def get_latest_statuses(self):
""" Retrieves the latest state of all runnables managed by this object.
Safe to call while a call to update_state(), wait_for_completion()
or run() is ongoing.
"""
self.status_lock.acquire()
status = copy.deepcopy(self.cached_status)
self.status_lock.release()
return status
def _get_empty_cached_status(self):
return {'PENDING': [], 'RUNNING': [], 'COMPLETED': [], 'FAILED': []}
def _update_cached_status(self):
status = self._get_empty_cached_status()
for r in self.runnables:
status[r.get_runnable_state().get_calc_state()].append(
r.get_uuid())
self.status_lock.acquire()
self.cached_status = status
self.status_lock.release()
def _submit(self):
if self.do_timing:
self.timer.start("Submitting %s runnables." %
(len(self.runnables)))
if not self.state == State.INITIALIZED:
print("Error: runnables already submitted, cannot resubmit.")
self.timer.stop()
return
# Insert all the runnables server-side.
import time
count = 0
for r in self.runnables:
self.runnables_module.insert(r, self.project_uuid)
count = count + 1
if count % 10 == 0:
print('Inserted ' + str(count) + ' runnables')
time.sleep(.5)
# TODO: support batched submission.
# # Batch runs are most efficient when submitted in a single call because of the
# # overhead of authorization, connecting to the database, etc. The server takes
# # ~20 seconds to submit 500 batch runs. We don't want to take more time than that
# # because calls time out around 60 seconds.
# submission_batch_size = 500
# # Use as many threads as we have batches to submit, up to an arbitrary maximum
# # of 10, which allows us to submit 5000 batches in parallel.
# if self.multi_threaded:
# num_batches = round(len(self.batch_runs) / submission_batch_size) + 1
# threads = min(num_batches, 10)
# else:
# threads = 1
# def _submit_batches(i):
# # Grab all the creation parameters from the batch objects.
# runs = self.batch_runs[i:i+submission_batch_size]
# params = [[b.get_propagation_params(), b.get_opm_params()] for b in runs]
# # Call to the server to create the batches.
# summaries = self.batches_module.new_batches(params)
# # Update the batches with the resulting state summaries.
# for summary_i in range(len(summaries)):
# self.batch_runs[i + summary_i].set_state_summary(summaries[summary_i])
# pool = ThreadPool(threads)
# # Break up the batches into chunks and submit them in chunks. For fewer than
# # <submission_batch_size> runs, this just submits them all in one request on one
# # thread.
# pool.map(_submit_batches,
# [i for i in range(0, len(self.batch_runs), submission_batch_size)])
# pool.close()
# pool.join()
# self._update_cached_status()
if self.do_timing:
self.timer.stop()
self.state = State.SUBMITTED
def _update_state(self):
""" Updates the state of all runnables managed by this object. When finished
updating runnable state, sets the state of this object to COMPLETED if all
managed runnables are in a final state (COMPLETED or FAILED).
"""
if self.state == State.INITIALIZED:
print("Error: runnables not yet submitted, no state to retrieve")
return
elif self.state == State.COMPLETED:
# No update is necessary, since nothing changes once the state is COMPLETED.
return
# First, update the status of all runnables.
runnable_states = self.runnables_module.get_runnable_states(
self.project_uuid)
runnable_states_by_uuid = {}
for runnable_state in runnable_states:
runnable_states_by_uuid[runnable_state.get_uuid()] = runnable_state
for runnable in self.runnables:
runnable.set_runnable_state(
runnable_states_by_uuid[runnable.get_uuid()])
# Then, if the state of this whole batch should be updated, do that.
complete = True
for runnable in self.runnables:
if not runnable.get_runnable_state().get_calc_state() in [
'COMPLETED', 'FAILED'
]:
complete = False
break
if complete:
self.state = State.COMPLETED
self._update_cached_status()
def _wait_for_completion(self):
""" Waits for the completion of all the batches managed by this object. When this
returns, all managed batches are guaranteed to be in a final state
(COMPLETED or FAILED).
"""
if self.do_timing:
self.timer.start("Running.")
while self.state != State.COMPLETED:
self._update_state()
if self.do_timing:
self.timer.stop()
def _get_results(self):
if self.do_timing:
self.timer.start("Retrieving runnable results.")
def _get_results(i):
r = self.runnables[i]
self.runnables_module.update_with_results(r)
r.set_children(self.runnables_module.get_children(r.get_uuid()))
if self.multi_threaded:
threads = 5
else:
threads = 1
pool = ThreadPool(threads)
pool.map(_get_results, [i for i in range(len(self.runnables))])
pool.close()
pool.join()
if self.do_timing:
self.timer.stop()
def run(self):
self._submit()
self._wait_for_completion()
self._get_results()
def teardown(self):
timer = Timer()
timer.start("Teardown")
self.projects.delete_project(self.project.get_uuid())
timer.stop()