def path_stage(self):
module_name = self.module_list[3]
check = False
while not check:
category = "pT"
options = ["is", "0", "1", "2", "3", "4", "Other"]
pt = ask.ask_option(category, options)
category = "pN"
options = ["0", "1", "2", "3", "4", "Other"]
pn = ask.ask_option(category, options)
category = ("M")
options = ["0", "1", "Other"]
m = ask.ask_option(category, options)
path_stage, clinical_stage = BlockDescription.stage(pt, pn, m)
last_update = datetime.now().strftime("%Y-%b-%d %H:%M")
data_list = [
pt, pn, m, path_stage, clinical_stage, self.user_name,
last_update
]
columns_list = names(module_name)
check = sql.review_input(self.file_number, columns_list, data_list)
return (tuple(data_list))
def surgery_block_information_2(self):
module_name = self.module_list[2]
data_list = ['NA', ] * 18
check = False
while not check:
ihc_report = BlockDescription.ihc_report(ihc_type='Tumour_surgery_block')
surgery_er, surgery_er_percent, surgery_pr, surgery_pr_percent, surgery_her2, surgery_her2_grade, \
surgery_fish, surgery_ki67 = ihc_report
surgery_subtype = breast_cancer_subtype('surgery', surgery_er, surgery_pr, surgery_her2,
surgery_her2_grade, surgery_fish)
node_details = self.node_details()
sentinel_node_number_removed, sentinel_node_number_positive, axillary_node_number_removed, \
axillary_node_number_positive, apical_node_number_removed, apical_node_number_positive = node_details
surgery_perinodal_spread = ask.ask_list('Perinodal Spread',
ask.create_yes_no_options
('Perinodal Spread', not_cancer='requires_follow_up'))
pathological_pt = input('Pathological T Status (Enter T0/T1/T2 etc as given in report): ')
pathological_pn = input('Pathological N Status (Enter N0/N1/N2 etc as given in report): ')
metastasis = ask.ask_y_n('Did the patient have metastasis at diagnosis?')
nat = sql.get_value(col_name='neoadjuvant_therapy', table=self.table_name, pk=self.fk, cursor=self.cursor,
pk_name='fk', error_statement='what is the nact status?')
if nat != 'nact_no':
prefix = 'yp'
else:
prefix = 'p'
pathological_stage, clinical_stage = BlockDescription.stage(pathological_pt, pathological_pn, metastasis,
prefix)
data_list = [surgery_er, surgery_er_percent, surgery_pr, surgery_pr_percent, surgery_her2,
surgery_her2_grade, surgery_fish, surgery_ki67, surgery_subtype, sentinel_node_number_removed,
sentinel_node_number_positive, axillary_node_number_removed, axillary_node_number_positive,
apical_node_number_removed, apical_node_number_positive, surgery_perinodal_spread,
pathological_pt, pathological_pn, str(metastasis).lower(), pathological_stage, clinical_stage,
self.user_name, sql.last_update()]
columns_list = names(module_name)
check = sql.review_input(self.file_number, columns_list[:-2], data_list[:-2])
return data_list