コード例 #1
0
ファイル: timeseries.py プロジェクト: fonnesbeck/pymc3
    def rv_op(cls, rhos, sigma, init_dist, steps, ar_order, constant_term, size=None):
        # Init dist should have shape (*size, ar_order)
        if size is not None:
            batch_size = size
        else:
            # In this case the size of the init_dist depends on the parameters shape
            # The last dimension of rho and init_dist does not matter
            batch_size = at.broadcast_shape(sigma, rhos[..., 0], init_dist[..., 0])
        if init_dist.owner.op.ndim_supp == 0:
            init_dist_size = (*batch_size, ar_order)
        else:
            # In this case the support dimension must cover for ar_order
            init_dist_size = batch_size
        init_dist = change_rv_size(init_dist, init_dist_size)

        # Create OpFromGraph representing random draws form AR process
        # Variables with underscore suffix are dummy inputs into the OpFromGraph
        init_ = init_dist.type()
        rhos_ = rhos.type()
        sigma_ = sigma.type()
        steps_ = steps.type()

        rhos_bcast_shape_ = init_.shape
        if constant_term:
            # In this case init shape is one unit smaller than rhos in the last dimension
            rhos_bcast_shape_ = (*rhos_bcast_shape_[:-1], rhos_bcast_shape_[-1] + 1)
        rhos_bcast_ = at.broadcast_to(rhos_, rhos_bcast_shape_)

        noise_rng = aesara.shared(np.random.default_rng())

        def step(*args):
            *prev_xs, reversed_rhos, sigma, rng = args
            if constant_term:
                mu = reversed_rhos[-1] + at.sum(prev_xs * reversed_rhos[:-1], axis=0)
            else:
                mu = at.sum(prev_xs * reversed_rhos, axis=0)
            next_rng, new_x = Normal.dist(mu=mu, sigma=sigma, rng=rng).owner.outputs
            return new_x, {rng: next_rng}

        # We transpose inputs as scan iterates over first dimension
        innov_, innov_updates_ = aesara.scan(
            fn=step,
            outputs_info=[{"initial": init_.T, "taps": range(-ar_order, 0)}],
            non_sequences=[rhos_bcast_.T[::-1], sigma_.T, noise_rng],
            n_steps=steps_,
            strict=True,
        )
        (noise_next_rng,) = tuple(innov_updates_.values())
        ar_ = at.concatenate([init_, innov_.T], axis=-1)

        ar_op = AutoRegressiveRV(
            inputs=[rhos_, sigma_, init_, steps_],
            outputs=[noise_next_rng, ar_],
            ar_order=ar_order,
            constant_term=constant_term,
            inline=True,
        )

        ar = ar_op(rhos, sigma, init_dist, steps)
        return ar
コード例 #2
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    def rv_op(cls, dist, lower=None, upper=None, size=None, rngs=None):

        lower = at.constant(
            -np.inf) if lower is None else at.as_tensor_variable(lower)
        upper = at.constant(
            np.inf) if upper is None else at.as_tensor_variable(upper)

        # When size is not specified, dist may have to be broadcasted according to lower/upper
        dist_shape = size if size is not None else at.broadcast_shape(
            dist, lower, upper)
        dist = change_rv_size(dist, dist_shape)

        # Censoring is achieved by clipping the base distribution between lower and upper
        rv_out = at.clip(dist, lower, upper)

        # Reference nodes to facilitate identification in other classmethods, without
        # worring about possible dimshuffles
        rv_out.tag.dist = dist
        rv_out.tag.lower = lower
        rv_out.tag.upper = upper

        if rngs is not None:
            rv_out = cls._change_rngs(rv_out, rngs)

        return rv_out
コード例 #3
0
ファイル: timeseries.py プロジェクト: fonnesbeck/pymc3
    def make_node(self, rng, size, dtype, mu, sigma, init, steps):
        steps = at.as_tensor_variable(steps)
        if not steps.ndim == 0 or not steps.dtype.startswith("int"):
            raise ValueError("steps must be an integer scalar (ndim=0).")

        mu = at.as_tensor_variable(mu)
        sigma = at.as_tensor_variable(sigma)
        init = at.as_tensor_variable(init)

        # Resize init distribution
        size = normalize_size_param(size)
        # If not explicit, size is determined by the shapes of mu, sigma, and init
        init_size = size if not rv_size_is_none(size) else at.broadcast_shape(mu, sigma, init)
        init = change_rv_size(init, init_size)

        return super().make_node(rng, size, dtype, mu, sigma, init, steps)
コード例 #4
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    def rv_op(cls, weights, *components, size=None):
        # Create new rng for the mix_indexes internal RV
        mix_indexes_rng = aesara.shared(np.random.default_rng())

        single_component = len(components) == 1
        ndim_supp = components[0].owner.op.ndim_supp

        if size is not None:
            components = cls._resize_components(size, *components)
        elif not single_component:
            # We might need to broadcast components when size is not specified
            shape = tuple(at.broadcast_shape(*components))
            size = shape[:len(shape) - ndim_supp]
            components = cls._resize_components(size, *components)

        # Extract replication ndims from components and weights
        ndim_batch = components[0].ndim - ndim_supp
        if single_component:
            # One dimension is taken by the mixture axis in the single component case
            ndim_batch -= 1

        # The weights may imply extra batch dimensions that go beyond what is already
        # implied by the component dimensions (ndim_batch)
        weights_ndim_batch = max(0, weights.ndim - ndim_batch - 1)

        # If weights are large enough that they would broadcast the component distributions
        # we try to resize them. This in necessary to avoid duplicated values in the
        # random method and for equivalency with the logp method
        if weights_ndim_batch:
            new_size = at.concatenate([
                weights.shape[:weights_ndim_batch],
                components[0].shape[:ndim_batch],
            ])
            components = cls._resize_components(new_size, *components)

            # Extract support and batch ndims from components and weights
            ndim_batch = components[0].ndim - ndim_supp
            if single_component:
                ndim_batch -= 1
            weights_ndim_batch = max(0, weights.ndim - ndim_batch - 1)

        assert weights_ndim_batch == 0

        # Component RVs terms are accounted by the Mixture logprob, so they can be
        # safely ignored by Aeppl
        components = [ignore_logprob(component) for component in components]

        # Create a OpFromGraph that encapsulates the random generating process
        # Create dummy input variables with the same type as the ones provided
        weights_ = weights.type()
        components_ = [component.type() for component in components]
        mix_indexes_rng_ = mix_indexes_rng.type()

        mix_axis = -ndim_supp - 1

        # Stack components across mixture axis
        if single_component:
            # If single component, we consider it as being already "stacked"
            stacked_components_ = components_[0]
        else:
            stacked_components_ = at.stack(components_, axis=mix_axis)

        # Broadcast weights to (*batched dimensions, stack dimension), ignoring support dimensions
        weights_broadcast_shape_ = stacked_components_.shape[:ndim_batch + 1]
        weights_broadcasted_ = at.broadcast_to(weights_,
                                               weights_broadcast_shape_)

        # Draw mixture indexes and append (stack + ndim_supp) broadcastable dimensions to the right
        mix_indexes_ = at.random.categorical(weights_broadcasted_,
                                             rng=mix_indexes_rng_)
        mix_indexes_padded_ = at.shape_padright(mix_indexes_, ndim_supp + 1)

        # Index components and squeeze mixture dimension
        mix_out_ = at.take_along_axis(stacked_components_,
                                      mix_indexes_padded_,
                                      axis=mix_axis)
        mix_out_ = at.squeeze(mix_out_, axis=mix_axis)

        # Output mix_indexes rng update so that it can be updated in place
        mix_indexes_rng_next_ = mix_indexes_.owner.outputs[0]

        mix_op = MarginalMixtureRV(
            inputs=[mix_indexes_rng_, weights_, *components_],
            outputs=[mix_indexes_rng_next_, mix_out_],
        )

        # Create the actual MarginalMixture variable
        mix_out = mix_op(mix_indexes_rng, weights, *components)

        # Reference nodes to facilitate identification in other classmethods
        mix_out.tag.weights = weights
        mix_out.tag.components = components
        mix_out.tag.choices_rng = mix_indexes_rng

        return mix_out