def test_single(self):
for strand in [1, -1]:
location = FeatureLocation(6, 9, strand)
new = build_location_from_others([location])
assert isinstance(new, FeatureLocation) and not isinstance(
new, CompoundLocation)
assert new == location
def test_single_compound(self):
for strand in [1, -1]:
location = CompoundLocation([
FeatureLocation(6, 9, strand),
FeatureLocation(12, 16, strand)
])
new = build_location_from_others([location])
assert new == location
def test_all_merged(self):
for strand in [1, -1]:
locations = [FeatureLocation(6, 9, strand),
FeatureLocation(9, 12, strand),
FeatureLocation(12, 16, strand)]
new = build_location_from_others(locations)
assert isinstance(new, FeatureLocation) and not isinstance(new, CompoundLocation)
assert new == FeatureLocation(6, 16, strand)
def test_some_merged(self):
for strand in [1, -1]:
locations = [FeatureLocation(1, 4, strand),
FeatureLocation(6, 9, strand),
FeatureLocation(9, 12, strand),
FeatureLocation(15, 18, strand)]
new = build_location_from_others(locations)
assert isinstance(new, CompoundLocation)
assert new == CompoundLocation([FeatureLocation(1, 4, strand),
FeatureLocation(6, 12, strand),
FeatureLocation(15, 18, strand)])
def test_separate(self):
locations = [FeatureLocation(6, 9, 1), FeatureLocation(12, 16, 1)]
new = build_location_from_others(locations)
assert isinstance(new, CompoundLocation)
assert new == CompoundLocation(locations)
