def test_overlapping(self):
assert overlapping_exons(build_compound([(10, 30), (20, 30)],
strand=1))
assert overlapping_exons(
build_compound([(10, 30), (70, 100), (20, 30)], strand=1))
assert overlapping_exons(
build_compound([(70, 100), (20, 30), (10, 30)], strand=1))
def test_bad_types(self):
for bad in [None, "loc", [FeatureLocation(10, 40)], 5]:
with self.assertRaises(TypeError):
overlapping_exons(bad)
def test_not_overlapping(self):
assert not overlapping_exons(
build_compound([(10, 30), (40, 70)], strand=1))
def test_non_compound(self):
assert not overlapping_exons(FeatureLocation(10, 40))
def test_frameshifted(self):
assert not overlapping_exons(
build_compound([(10, 30), (29, 59)], strand=1))
def test_small_exons(self):
assert not overlapping_exons(
build_compound([(10, 30), (29, 30), (50, 80)], strand=1))