def test_gene_ontologies_fail(self):
fail_ontology = {'GO:0004871': 'signal transducer activity'}
fail_pfam = 15
sample_ontology = pfam2go.GeneOntology('GO:0004871',
'signal transducer activity')
sample_pfam = 'PF00015'
with self.assertRaises(AssertionError):
pfam2go.GeneOntologies(sample_pfam, fail_ontology)
with self.assertRaises(AssertionError):
pfam2go.GeneOntologies(fail_pfam, [sample_ontology])
def test_gene_ontologies(self):
# does it use arguments given? How is bad input handled?
sample_ontology = pfam2go.GeneOntology('GO:0004871',
'signal transducer activity')
sample_pfam = 'PF00015'
sample_ontologies = pfam2go.GeneOntologies(sample_pfam,
[sample_ontology])
assert sample_ontologies.pfam == sample_pfam
assert sample_ontologies.go_entries == [sample_ontology]
all_entries = [
str(go_entry) for go_entry in sample_ontologies.go_entries
]
assert sample_ontology.id in all_entries