def __init__(self, domain=None):
Reflective_boundary.__init__(self, domain)
self.conc=domain.quantities['concentration']
self.evolved_quantities = np.zeros(4, np.float)
def evaluate_segment(self, domain, segment_edges):
"""Apply reflective BC on the boundary edges defined by
segment_edges
"""
Reflective_boundary.evaluate_segment(self, domain, segment_edges)
if segment_edges is None:
return
if domain is None:
return
ids = segment_edges
vol_ids = domain.boundary_cells[ids]
edge_ids = domain.boundary_edges[ids]
Conc = domain.quantities['concentration']
Conc.boundary_values[ids] = Conc.edge_values[vol_ids,edge_ids]
def test_get_flow_through_cross_section_with_geo(self):
"""test_get_flow_through_cross_section(self):
Test that the total flow through a cross section can be
correctly obtained at run-time from the ANUGA domain.
This test creates a flat bed with a known flow through it and tests
that the function correctly returns the expected flow.
The specifics are
e = -1 m
u = 2 m/s
h = 2 m
w = 3 m (width of channel)
q = u*h*w = 12 m^3/s
This run tries it with georeferencing and with elevation = -1
"""
# Create basic mesh (20m x 3m)
width = 3
length = 20
t_end = 1
points, vertices, boundary = rectangular(length, width, length, width)
# Create shallow water domain
domain = Domain(points,
vertices,
boundary,
geo_reference=Geo_reference(56, 308500, 6189000))
domain.default_order = 2
domain.set_quantities_to_be_stored(None)
e = -1.0
w = 1.0
h = w - e
u = 2.0
uh = u * h
Br = Reflective_boundary(domain) # Side walls
Bd = Dirichlet_boundary([w, uh, 0]) # 2 m/s across the 3 m inlet:
# Initial conditions
domain.set_quantity('elevation', e)
domain.set_quantity('stage', w)
domain.set_quantity('xmomentum', uh)
domain.set_boundary({'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})
# Interpolation points down the middle
I = [[0, width / 2.], [length / 2., width / 2.], [length, width / 2.]]
interpolation_points = domain.geo_reference.get_absolute(I)
for t in domain.evolve(yieldstep=0.1, finaltime=0.5):
# Shortcuts to quantites
stage = domain.get_quantity('stage')
xmomentum = domain.get_quantity('xmomentum')
ymomentum = domain.get_quantity('ymomentum')
# Check that quantities are they should be in the interior
w_t = stage.get_values(interpolation_points)
uh_t = xmomentum.get_values(interpolation_points)
vh_t = ymomentum.get_values(interpolation_points)
assert num.allclose(w_t, w)
assert num.allclose(uh_t, uh)
assert num.allclose(vh_t, 0.0, atol=1.0e-6)
# Check flows through the middle
for i in range(5):
x = length / 2. + i * 0.23674563 # Arbitrary
cross_section = [[x, 0], [x, width]]
cross_section = domain.geo_reference.get_absolute(
cross_section)
Q = domain.get_flow_through_cross_section(cross_section,
verbose=False)
assert num.allclose(Q, uh * width)
import cPickle
cPickle.dump(domain, open('domain_pickle.pickle', 'w'))
domain_restored = cPickle.load(open('domain_pickle.pickle'))
for t in domain_restored.evolve(yieldstep=0.1, finaltime=1.0):
# Shortcuts to quantites
stage = domain_restored.get_quantity('stage')
xmomentum = domain_restored.get_quantity('xmomentum')
ymomentum = domain_restored.get_quantity('ymomentum')
# Check that quantities are they should be in the interior
w_t = stage.get_values(interpolation_points)
uh_t = xmomentum.get_values(interpolation_points)
vh_t = ymomentum.get_values(interpolation_points)
assert num.allclose(w_t, w)
assert num.allclose(uh_t, uh)
assert num.allclose(vh_t, 0.0, atol=1.0e-6)
# Check flows through the middle
for i in range(5):
x = length / 2. + i * 0.23674563 # Arbitrary
cross_section = [[x, 0], [x, width]]
cross_section = domain_restored.geo_reference.get_absolute(
cross_section)
Q = domain_restored.get_flow_through_cross_section(
cross_section, verbose=False)
assert num.allclose(Q, uh * width)
def test_get_maximum_inundation_from_sww(self):
"""test_get_maximum_inundation_from_sww(self)
Test of get_maximum_inundation_elevation()
and get_maximum_inundation_location().
This is based on test_get_maximum_inundation_3(self) but works with the
stored results instead of with the internal data structure.
This test uses the underlying get_maximum_inundation_data for tests
"""
verbose = False
from anuga.config import minimum_storable_height
initial_runup_height = -0.4
final_runup_height = -0.3
filename = 'runup_test_2'
#--------------------------------------------------------------
# Setup computational domain
#--------------------------------------------------------------
N = 10
points, vertices, boundary = rectangular_cross(N, N)
domain = Domain(points, vertices, boundary)
domain.set_low_froude(0)
domain.set_name(filename)
domain.set_maximum_allowed_speed(1.0)
#domain.set_minimum_storable_height(1.0e-5)
domain.set_store_vertices_uniquely()
# FIXME: This works better with old limiters so far
domain.tight_slope_limiters = 0
#--------------------------------------------------------------
# Setup initial conditions
#--------------------------------------------------------------
def topography(x, y):
return old_div(-x, 2) # linear bed slope
# Use function for elevation
domain.set_quantity('elevation', topography)
domain.set_quantity('friction', 0.) # Zero friction
# Constant negative initial stage
domain.set_quantity('stage', initial_runup_height)
#--------------------------------------------------------------
# Setup boundary conditions
#--------------------------------------------------------------
Br = Reflective_boundary(domain) # Reflective wall
Bd = Dirichlet_boundary([final_runup_height, 0, 0]) # Constant inflow
# All reflective to begin with (still water)
domain.set_boundary({'left': Br, 'right': Br, 'top': Br, 'bottom': Br})
#--------------------------------------------------------------
# Test initial inundation height
#--------------------------------------------------------------
indices = domain.get_wet_elements()
z = domain.get_quantity('elevation').\
get_values(location='centroids', indices=indices)
assert num.alltrue(z < initial_runup_height)
q_ref = domain.get_maximum_inundation_elevation(
minimum_height=minimum_storable_height)
# First order accuracy
assert num.allclose(q_ref, initial_runup_height, rtol=1.0 / N)
#--------------------------------------------------------------
# Let triangles adjust
#--------------------------------------------------------------
q_max = None
for t in domain.evolve(yieldstep=0.1, finaltime=1.0):
q = domain.get_maximum_inundation_elevation(
minimum_height=minimum_storable_height)
if verbose:
domain.write_time()
print(q)
if q is None and q_max is None:
pass
elif q_max is None or q > q_max:
q_max = q
else:
pass
#--------------------------------------------------------------
# Test inundation height again
#--------------------------------------------------------------
#q_ref = domain.get_maximum_inundation_elevation()
q = get_maximum_inundation_elevation(filename + '.sww')
msg = 'We got %f, should have been %f' % (q, q_max)
assert num.allclose(q, q_max, rtol=2.0 / N), msg
msg = 'We got %f, should have been %f' % (q, initial_runup_height)
assert num.allclose(q, initial_runup_height, rtol=1.0 / N), msg
# Test error condition if time interval is out
try:
q = get_maximum_inundation_elevation(filename + '.sww',
time_interval=[2.0, 3.0])
except ValueError:
pass
else:
msg = 'should have caught wrong time interval'
raise_(Exception, msg)
# Check correct time interval
q, loc = get_maximum_inundation_data(filename + '.sww',
time_interval=[0.0, 3.0])
msg = 'We got %f, should have been %f' % (q, initial_runup_height)
assert num.allclose(q, initial_runup_height, rtol=1.0 / N), msg
assert num.allclose(old_div(-loc[0], 2), q) # From topography formula
#--------------------------------------------------------------
# Update boundary to allow inflow
#--------------------------------------------------------------
domain.set_boundary({'right': Bd})
#--------------------------------------------------------------
# Evolve system through time
#--------------------------------------------------------------
for t in domain.evolve(yieldstep=0.1,
finaltime=3.0,
skip_initial_step=True):
q = domain.get_maximum_inundation_elevation(
minimum_height=minimum_storable_height)
if verbose:
domain.write_time()
print(q)
if q > q_max:
q_max = q
#--------------------------------------------------------------
# Test inundation height again
#--------------------------------------------------------------
indices = domain.get_wet_elements()
z = domain.get_quantity('elevation').\
get_values(location='centroids', indices=indices)
assert num.alltrue(z < final_runup_height + 1.0 / N)
q = domain.get_maximum_inundation_elevation()
# First order accuracy
assert num.allclose(q, final_runup_height, rtol=1.0 / N)
q, loc = get_maximum_inundation_data(filename + '.sww',
time_interval=[3.0, 3.0])
msg = 'We got %f, should have been %f' % (q, final_runup_height)
assert num.allclose(q, final_runup_height, rtol=1.0 / N), msg
assert num.allclose(old_div(-loc[0], 2), q) # From topography formula
q = get_maximum_inundation_elevation(filename + '.sww',
verbose=verbose)
loc = get_maximum_inundation_location(filename + '.sww')
msg = 'We got %f, should have been %f' % (q, q_max)
assert num.allclose(q, q_max, rtol=1.0 / N), msg
assert num.allclose(old_div(-loc[0], 2), q) # From topography formula
q = get_maximum_inundation_elevation(filename + '.sww',
time_interval=[0, 3])
msg = 'We got %f, should have been %f' % (q, q_max)
assert num.allclose(q, q_max, rtol=1.0 / N), msg
# Check polygon mode
# Runup region
polygon = [[0.3, 0.0], [0.9, 0.0], [0.9, 1.0], [0.3, 1.0]]
q = get_maximum_inundation_elevation(filename + '.sww',
polygon=polygon,
time_interval=[0, 3])
msg = 'We got %f, should have been %f' % (q, q_max)
assert num.allclose(q, q_max, rtol=1.0 / N), msg
# Offshore region
polygon = [[0.9, 0.0], [1.0, 0.0], [1.0, 1.0], [0.9, 1.0]]
q, loc = get_maximum_inundation_data(filename + '.sww',
polygon=polygon,
time_interval=[0, 3])
msg = 'We got %f, should have been %f' % (q, -0.475)
assert num.allclose(q, -0.475, rtol=1.0 / N), msg
assert is_inside_polygon(loc, polygon)
assert num.allclose(old_div(-loc[0], 2), q) # From topography formula
# Dry region
polygon = [[0.0, 0.0], [0.4, 0.0], [0.4, 1.0], [0.0, 1.0]]
q, loc = get_maximum_inundation_data(filename + '.sww',
polygon=polygon,
time_interval=[0, 3])
msg = 'We got %s, should have been None' % (q)
assert q is None, msg
msg = 'We got %s, should have been None' % (loc)
assert loc is None, msg
# Check what happens if no time point is within interval
try:
q = get_maximum_inundation_elevation(filename + '.sww',
time_interval=[2.75, 2.75])
except AssertionError:
pass
else:
msg = 'Time interval should have raised an exception'
raise_(Exception, msg)
# Cleanup
try:
pass
#os.remove(domain.get_name() + '.sww')
except:
pass
def test_get_energy_through_cross_section(self):
"""test_get_energy_through_cross_section(self):
Test that the specific and total energy through a cross section can be
correctly obtained from an sww file.
This test creates a flat bed with a known flow through it and tests
that the function correctly returns the expected energies.
The specifics are
u = 2 m/s
h = 1 m
w = 3 m (width of channel)
q = u*h*w = 6 m^3/s
Es = h + 0.5*v*v/g # Specific energy head [m]
Et = w + 0.5*v*v/g # Total energy head [m]
This test uses georeferencing
"""
import time, os
from anuga.file.netcdf import NetCDFFile
# Setup
#from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
# Create basic mesh (20m x 3m)
width = 3
length = 20
t_end = 1
points, vertices, boundary = rectangular(length, width, length, width)
# Create shallow water domain
domain = Domain(points,
vertices,
boundary,
geo_reference=Geo_reference(56, 308500, 6189000))
domain.default_order = 2
domain.set_minimum_storable_height(0.01)
domain.set_name('flowtest')
swwfile = domain.get_name() + '.sww'
domain.set_datadir('.')
domain.format = 'sww'
domain.smooth = True
e = -1.0
w = 1.0
h = w - e
u = 2.0
uh = u * h
Br = Reflective_boundary(domain) # Side walls
Bd = Dirichlet_boundary([w, uh, 0]) # 2 m/s across the 3 m inlet:
domain.set_quantity('elevation', e)
domain.set_quantity('stage', w)
domain.set_quantity('xmomentum', uh)
domain.set_boundary({'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})
for t in domain.evolve(yieldstep=1, finaltime=t_end):
pass
# Check that momentum is as it should be in the interior
I = [[0, width / 2.], [length / 2., width / 2.], [length, width / 2.]]
I = domain.geo_reference.get_absolute(I)
f = file_function(swwfile,
quantities=['stage', 'xmomentum', 'ymomentum'],
interpolation_points=I,
verbose=False)
for t in range(t_end + 1):
for i in range(3):
#print i, t, f(t, i)
assert num.allclose(f(t, i), [w, uh, 0], atol=1.0e-6)
# Check energies through the middle
for i in range(5):
x = length / 2. + i * 0.23674563 # Arbitrary
cross_section = [[x, 0], [x, width]]
cross_section = domain.geo_reference.get_absolute(cross_section)
time, Es = get_energy_through_cross_section(swwfile,
cross_section,
kind='specific',
verbose=False)
assert num.allclose(Es, h + 0.5 * u * u / g)
time, Et = get_energy_through_cross_section(swwfile,
cross_section,
kind='total',
verbose=False)
assert num.allclose(Et, w + 0.5 * u * u / g)
def test_get_flow_through_cross_section_stored_uniquely(self):
"""test_get_flow_through_cross_section_stored_uniquely(self):
Test that the total flow through a cross section can be
correctly obtained from an sww file.
This test creates a flat bed with a known flow through it and tests
that the function correctly returns the expected flow.
The specifics are
u = 2 m/s
h = 1 m
w = 3 m (width of channel)
q = u*h*w = 6 m^3/s
"""
import time, os
from anuga.file.netcdf import NetCDFFile
# Setup
#from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
# Create basic mesh (20m x 3m)
width = 3
length = 20
t_end = 3
points, vertices, boundary = rectangular(length, width, length, width)
# Create shallow water domain
domain = Domain(points, vertices, boundary)
domain.default_order = 2
domain.set_minimum_storable_height(0.01)
domain.set_name('flowtest_uniquely')
swwfile = domain.get_name() + '.sww'
domain.set_store_vertices_uniquely()
domain.set_datadir('.')
domain.format = 'sww'
domain.smooth = True
h = 1.0
u = 2.0
uh = u * h
Br = Reflective_boundary(domain) # Side walls
Bd = Dirichlet_boundary([h, uh, 0]) # 2 m/s across the 3 m inlet:
domain.set_quantity('elevation', 0.0)
domain.set_quantity('stage', h)
domain.set_quantity('xmomentum', uh)
domain.set_boundary({'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})
for t in domain.evolve(yieldstep=1, finaltime=t_end):
pass
# Check that momentum is as it should be in the interior
I = [[0, width / 2.], [length / 2., width / 2.], [length, width / 2.]]
f = file_function(swwfile,
quantities=['stage', 'xmomentum', 'ymomentum'],
interpolation_points=I,
verbose=False)
for t in range(t_end + 1):
for i in range(3):
assert num.allclose(f(t, i), [1, 2, 0], atol=1.0e-6)
# Check flows through the middle
for i in range(5):
x = length / 2. + i * 0.23674563 # Arbitrary
cross_section = [[x, 0], [x, width]]
time, Q = get_flow_through_cross_section(swwfile,
cross_section,
verbose=False)
assert num.allclose(Q, uh * width)
# Try the same with partial lines
x = length / 2.
for i in range(5):
start_point = [length / 2., i * width / 5.]
#print start_point
cross_section = [start_point, [length / 2., width]]
time, Q = get_flow_through_cross_section(swwfile,
cross_section,
verbose=False)
#print i, Q, (width-start_point[1])
assert num.allclose(Q, uh * (width - start_point[1]))
# Verify no flow when line is parallel to flow
cross_section = [[length / 2. - 10, width / 2.],
[length / 2. + 10, width / 2.]]
time, Q = get_flow_through_cross_section(swwfile,
cross_section,
verbose=False)
#print i, Q
assert num.allclose(Q, 0, atol=1.0e-5)
# Try with lines on an angle (all flow still runs through here)
cross_section = [[length / 2., 0], [length / 2. + width, width]]
time, Q = get_flow_through_cross_section(swwfile,
cross_section,
verbose=False)
assert num.allclose(Q, uh * width)
def test_get_maximum_inundation_de0(self):
"""Test that sww information can be converted correctly to maximum
runup elevation and location (without and with georeferencing)
This test creates a slope and a runup which is maximal (~11m) at around 10s
and levels out to the boundary condition (1m) at about 30s.
"""
import time, os
from anuga.file.netcdf import NetCDFFile
verbose = False
#Setup
#from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
# Create basic mesh (100m x 100m)
points, vertices, boundary = rectangular(20, 5, 100, 50)
# Create shallow water domain
domain = Domain(points, vertices, boundary)
domain.set_flow_algorithm('DE0')
domain.set_low_froude(0)
domain.set_minimum_storable_height(0.01)
filename = 'runup_test_3'
domain.set_name(filename)
swwfile = domain.get_name() + '.sww'
domain.set_datadir('.')
domain.format = 'sww'
domain.smooth = True
# FIXME (Ole): Backwards compatibility
# Look at sww file and see what happens when
# domain.tight_slope_limiters = 1
domain.tight_slope_limiters = 0
domain.use_centroid_velocities = 0 # Backwards compatibility (7/5/8)
Br = Reflective_boundary(domain)
Bd = Dirichlet_boundary([1.0, 0, 0])
#---------- First run without geo referencing
domain.set_quantity('elevation', lambda x, y: -0.2 * x + 14) # Slope
domain.set_quantity('stage', -6)
domain.set_boundary({'left': Br, 'right': Bd, 'top': Br, 'bottom': Br})
for t in domain.evolve(yieldstep=1, finaltime=50):
pass
# Check maximal runup
runup, location, max_time = get_maximum_inundation_data(
swwfile, return_time=True)
if verbose:
print('Runup, location', runup, location, max_time)
assert num.allclose(runup, 3.33333325386)
assert num.allclose(location, [53.333332, 43.333332])
assert num.allclose(max_time, 10.0)
# Check runup in restricted time interval
runup, location, max_time = get_maximum_inundation_data(
swwfile, time_interval=[0, 9], return_time=True)
if verbose:
print('Runup, location:', runup, location, max_time)
assert num.allclose(runup, 2.66666674614)
assert num.allclose(location, [56.666668, 16.666666])
assert num.allclose(max_time, 9.0)
# Check final runup
runup, location = get_maximum_inundation_data(swwfile,
time_interval=[45, 50])
if verbose:
print('Runup, location:', runup, location, max_time)
assert num.allclose(runup, 3.33333325386)
assert num.allclose(location, [53.333332, 33.333332])
#assert num.allclose(max_time, 45.0)
# Check runup restricted to a polygon
p = [[50, 1], [99, 1], [99, 40], [50, 40]]
runup, location = get_maximum_inundation_data(swwfile, polygon=p)
#runup = get_maximum_inundation_elevation(swwfile, polygon=p)
#location = get_maximum_inundation_location(swwfile, polygon=p)
#print runup, location, max_time
assert num.allclose(runup, 3.33333325386)
assert num.allclose(location, [53.333332, 33.333332])
#assert num.allclose(max_time, 11.0)
# Check that mimimum_storable_height works
fid = NetCDFFile(swwfile, netcdf_mode_r) # Open existing file
stage = fid.variables['stage_c'][:]
z = fid.variables['elevation_c'][:]
xmomentum = fid.variables['xmomentum_c'][:]
ymomentum = fid.variables['ymomentum_c'][:]
for i in range(stage.shape[0]):
h = stage[i] - z # depth vector at time step i
# Check every node location
for j in range(stage.shape[1]):
# Depth being either exactly zero implies
# momentum being zero.
# Or else depth must be greater than or equal to
# the minimal storable height
if h[j] == 0.0:
assert xmomentum[i, j] == 0.0
assert ymomentum[i, j] == 0.0
else:
assert h[j] >= 0.0
fid.close()
# Cleanup
os.remove(swwfile)
#------------- Now the same with georeferencing
domain.time = 0.0
E = 308500
N = 6189000
#E = N = 0
domain.geo_reference = Geo_reference(56, E, N)
domain.set_quantity('elevation', lambda x, y: -0.2 * x + 14) # Slope
domain.set_quantity('stage', -6)
domain.set_boundary({'left': Br, 'right': Bd, 'top': Br, 'bottom': Br})
for t in domain.evolve(yieldstep=1, finaltime=50):
pass
# Check maximal runup
runup, location = get_maximum_inundation_data(swwfile)
#print 'Runup, location', runup, location, max_time
assert num.allclose(runup, 3.33333325386)
assert num.allclose(location, [53.333332 + E, 43.333332 + N])
#assert num.allclose(max_time, 10.0)
# Check runup in restricted time interval
runup, location = get_maximum_inundation_data(swwfile,
time_interval=[0, 9])
#print 'Runup, location:',runup, location, max_time
assert num.allclose(runup, 2.66666674614)
assert num.allclose(location, [56.666668 + E, 16.666666 + N])
#assert num.allclose(max_time, 9.0)
# Check final runup
runup, location = get_maximum_inundation_data(swwfile,
time_interval=[45, 50])
#print 'Runup, location:',runup, location, max_time
assert num.allclose(runup, 3.33333325386)
assert num.allclose(location, [53.333332 + E, 33.333332 + N])
#assert num.allclose(max_time, 45.0)
# Check runup restricted to a polygon
p = num.array([[50, 1], [99, 1], [99, 40], [50, 40]],
num.int) + num.array([E, N], num.int)
runup, location = get_maximum_inundation_data(swwfile, polygon=p)
#print runup, location, max_time
assert num.allclose(runup, 3.33333325386)
assert num.allclose(location, [53.333332 + E, 33.333332 + N])
#assert num.allclose(max_time, 11.0)
# Cleanup
os.remove(swwfile)
def test_sww2domain1(self):
################################################
#Create a test domain, and evolve and save it.
################################################
#from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
#Create basic mesh
yiel = 0.01
points, vertices, boundary = rectangular(10, 10)
#print "=============== boundary rect ======================="
#print boundary
#Create shallow water domain
domain = Domain(points, vertices, boundary)
domain.geo_reference = Geo_reference(56, 11, 11)
domain.smooth = False
domain.store = True
domain.set_name('bedslope')
domain.default_order = 2
#Bed-slope and friction
domain.set_quantity('elevation', lambda x, y: -x / 3)
domain.set_quantity('friction', 0.1)
# Boundary conditions
from math import sin, pi
Br = Reflective_boundary(domain)
Bt = Transmissive_boundary(domain)
Bd = Dirichlet_boundary([0.2, 0., 0.])
Bw = Time_boundary(
domain=domain,
function=lambda t: [(0.1 * sin(t * 2 * pi)), 0.0, 0.0])
#domain.set_boundary({'left': Bd, 'right': Br, 'top': Br, 'bottom': Br})
domain.set_boundary({'left': Bd, 'right': Bd, 'top': Bd, 'bottom': Bd})
domain.quantities_to_be_stored['xmomentum'] = 2
domain.quantities_to_be_stored['ymomentum'] = 2
#Initial condition
h = 0.05
elevation = domain.quantities['elevation'].vertex_values
domain.set_quantity('stage', elevation + h)
domain.check_integrity()
#Evolution
#domain.tight_slope_limiters = 1
for t in domain.evolve(yieldstep=yiel, finaltime=0.05):
#domain.write_time()
pass
#print boundary
filename = domain.datadir + os.sep + domain.get_name() + '.sww'
domain2 = load_sww_as_domain(filename,
None,
fail_if_NaN=False,
verbose=self.verbose)
# Unfortunately we loss the boundaries top, bottom, left and right,
# they are now all lumped into "exterior"
#print "=============== boundary domain2 ======================="
#print domain2.boundary
#print domain2.get_boundary_tags()
#points, vertices, boundary = rectangular(15,15)
#domain2.boundary = boundary
###################
##NOW TEST IT!!!
###################
os.remove(filename)
bits = ['vertex_coordinates']
for quantity in ['stage']:
bits.append('get_quantity("%s").get_integral()' % quantity)
bits.append('get_quantity("%s").get_values()' % quantity)
for bit in bits:
#print 'testing that domain.'+bit+' has been restored'
#print bit
#print 'done'
#print eval('domain.'+bit)
#print eval('domain2.'+bit)
assert num.allclose(eval('domain.' + bit), eval('domain2.' + bit))
######################################
#Now evolve them both, just to be sure
######################################x
from time import sleep
final = .1
domain.set_quantity('friction', 0.1)
domain.store = False
domain.set_boundary({
'exterior': Bd,
'left': Bd,
'right': Bd,
'top': Bd,
'bottom': Bd
})
for t in domain.evolve(yieldstep=yiel, finaltime=final):
#domain.write_time()
pass
#BUT since domain1 gets time hacked back to 0:
final = final + (domain2.get_starttime() - domain.get_starttime())
domain2.smooth = False
domain2.store = False
domain2.default_order = 2
domain2.set_quantity('friction', 0.1)
#Bed-slope and friction
# Boundary conditions
Bd2 = Dirichlet_boundary([0.2, 0., 0.])
domain2.boundary = domain.boundary
#print 'domain2.boundary'
#print domain2.boundary
domain2.set_boundary({
'exterior': Bd,
'left': Bd,
'right': Bd,
'top': Bd,
'bottom': Bd
})
#domain2.set_boundary({'exterior': Bd})
domain2.check_integrity()
for t in domain2.evolve(yieldstep=yiel, finaltime=final):
#domain2.write_time()
pass
###################
##NOW TEST IT!!!
##################
bits = ['vertex_coordinates']
for quantity in ['elevation', 'stage', 'ymomentum', 'xmomentum']:
bits.append('get_quantity("%s").get_integral()' % quantity)
bits.append('get_quantity("%s").get_values()' % quantity)
#print bits
for bit in bits:
#print bit
#print eval('domain.'+bit)
#print eval('domain2.'+bit)
#print eval('domain.'+bit+'-domain2.'+bit)
msg = 'Values in the two domains are different for ' + bit
assert num.allclose(eval('domain.' + bit),
eval('domain2.' + bit),
rtol=5.e-2,
atol=5.e-2), msg
def test_get_mesh_and_quantities_from_unique_vertices_sww_file(self):
"""test_get_mesh_and_quantities_from_unique_vertices_sww_file(self):
"""
# Generate a test sww file with non trivial georeference
import time, os
# Setup
#from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
# Create basic mesh (100m x 5m)
width = 5
length = 50
t_end = 10
points, vertices, boundary = rectangular(10, 1, length, width)
# Create shallow water domain
domain = Domain(points,
vertices,
boundary,
geo_reference=Geo_reference(56, 308500, 6189000))
domain.set_name(
'test_get_mesh_and_quantities_from_unique_vertices_sww_file')
swwfile = domain.get_name() + '.sww'
domain.set_datadir('.')
domain.set_store_vertices_uniquely()
Br = Reflective_boundary(domain) # Side walls
Bd = Dirichlet_boundary([1, 0, 0]) # inflow
domain.set_boundary({'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})
for t in domain.evolve(yieldstep=1, finaltime=t_end):
pass
# Read it
# Get mesh and quantities from sww file
X = get_mesh_and_quantities_from_file(
swwfile,
quantities=['elevation', 'stage', 'xmomentum', 'ymomentum'],
verbose=False)
mesh, quantities, time = X
#print quantities
#print time
dhash = domain.get_nodes()[:, 0] * 10 + domain.get_nodes()[:, 1]
mhash = mesh.nodes[:, 0] * 10 + mesh.nodes[:, 1]
#print 'd_nodes',len(dhash)
#print 'm_nodes',len(mhash)
di = num.argsort(dhash)
mi = num.argsort(mhash)
minv = num.argsort(mi)
dinv = num.argsort(di)
#print 'd_tri',len(domain.get_triangles())
#print 'm_tri',len(mesh.triangles)
# Check that mesh has been recovered
# triangle order should be ok
assert num.allclose(mesh.nodes[mi, :], domain.get_nodes()[di, :])
assert num.alltrue(
minv[mesh.triangles] == dinv[domain.get_triangles()])
# Check that time has been recovered
assert num.allclose(time, range(t_end + 1))
z = domain.get_quantity('elevation').get_values(
location='unique vertices')
assert num.allclose(quantities['elevation'], z)
for q in ['stage', 'xmomentum', 'ymomentum']:
# Get quantity at last timestep
q_ref = domain.get_quantity(q).get_values(
location='unique vertices')
#print q,quantities[q]
q_sww = quantities[q][-1, :]
msg = 'Quantity %s failed to be recovered' % q
assert num.allclose(q_ref[di], q_sww[mi], atol=1.0e-6), msg
def test_get_mesh_and_quantities_from_sww_file(self):
"""test_get_mesh_and_quantities_from_sww_file(self):
"""
# Generate a test sww file with non trivial georeference
import time, os
# Setup
#from anuga.abstract_2d_finite_volumes.mesh_factory import rectangular
# Create basic mesh (100m x 5m)
width = 5
length = 50
t_end = 10
points, vertices, boundary = rectangular(length, width, 50, 5)
# Create shallow water domain
domain = Domain(points,
vertices,
boundary,
geo_reference=Geo_reference(56, 308500, 6189000))
domain.set_name('test_get_mesh_and_quantities_from_sww_file')
swwfile = domain.get_name() + '.sww'
domain.set_datadir('.')
Br = Reflective_boundary(domain) # Side walls
Bd = Dirichlet_boundary([1, 0, 0]) # inflow
domain.set_boundary({'left': Bd, 'right': Bd, 'top': Br, 'bottom': Br})
for t in domain.evolve(yieldstep=1, finaltime=t_end):
pass
# Read it
# Get mesh and quantities from sww file
X = get_mesh_and_quantities_from_file(
swwfile,
quantities=['elevation', 'stage', 'xmomentum', 'ymomentum'],
verbose=False)
mesh, quantities, time = X
# Check that mesh has been recovered
assert num.alltrue(mesh.triangles == domain.get_triangles())
assert num.allclose(mesh.nodes, domain.get_nodes())
# Check that time has been recovered
assert num.allclose(time, range(t_end + 1))
# Check that quantities have been recovered
# (sww files use single precision)
z = domain.get_quantity('elevation').get_values(
location='unique vertices')
assert num.allclose(quantities['elevation'], z)
for q in ['stage', 'xmomentum', 'ymomentum']:
# Get quantity at last timestep
q_ref = domain.get_quantity(q).get_values(
location='unique vertices')
#print q,quantities[q]
q_sww = quantities[q][-1, :]
msg = 'Quantity %s failed to be recovered' % q
assert num.allclose(q_ref, q_sww, atol=1.0e-6), msg
def test_file_boundary_stsIV_sinewave_ordering(self):
"""test_file_boundary_stsIV_sinewave_ordering(self):
Read correct points from ordering file and apply sts to boundary
This one uses a sine wave and compares to time boundary
"""
lat_long_points=[[6.01, 97.0], [6.02, 97.0], [6.05, 96.9], [6.0, 97.0]]
bounding_polygon=[[6.0, 97.0], [6.01, 97.0], [6.02,97.0], \
[6.02,97.02], [6.00,97.02]]
tide = 0.35
time_step_count = 50
time_step = 0.1
times_ref = num.arange(0, time_step_count*time_step, time_step)
n=len(lat_long_points)
first_tstep=num.ones(n,num.int)
last_tstep=(time_step_count)*num.ones(n,num.int)
gauge_depth=20*num.ones(n,num.float)
ha1=num.ones((n,time_step_count),num.float)
ua1=3.*num.ones((n,time_step_count),num.float)
va1=2.*num.ones((n,time_step_count),num.float)
for i in range(n):
ha1[i]=num.sin(times_ref)
base_name, files = self.write_mux2(lat_long_points,
time_step_count, time_step,
first_tstep, last_tstep,
depth=gauge_depth,
ha=ha1,
ua=ua1,
va=va1)
# Write order file
file_handle, order_base_name = tempfile.mkstemp("")
os.close(file_handle)
os.remove(order_base_name)
d=","
order_file=order_base_name+'order.txt'
fid=open(order_file,'w')
# Write Header
header='index, longitude, latitude\n'
fid.write(header)
indices=[3,0,1]
for i in indices:
line=str(i)+d+str(lat_long_points[i][1])+d+\
str(lat_long_points[i][0])+"\n"
fid.write(line)
fid.close()
sts_file=base_name
urs2sts(base_name, basename_out=sts_file,
ordering_filename=order_file,
mean_stage=tide,
verbose=False)
self.delete_mux(files)
# Now read the sts file and check that values have been stored correctly.
fid = NetCDFFile(sts_file + '.sts')
# Check the time vector
times = fid.variables['time'][:]
#print times
# Check sts quantities
stage = fid.variables['stage'][:]
xmomentum = fid.variables['xmomentum'][:]
ymomentum = fid.variables['ymomentum'][:]
elevation = fid.variables['elevation'][:]
# Create beginnings of boundary polygon based on sts_boundary
boundary_polygon = create_sts_boundary(base_name)
os.remove(order_file)
# Append the remaining part of the boundary polygon to be defined by
# the user
bounding_polygon_utm=[]
for point in bounding_polygon:
zone,easting,northing=redfearn(point[0],point[1])
bounding_polygon_utm.append([easting,northing])
boundary_polygon.append(bounding_polygon_utm[3])
boundary_polygon.append(bounding_polygon_utm[4])
#print 'boundary_polygon', boundary_polygon
plot=False
if plot:
from pylab import plot,show,axis
boundary_polygon=ensure_numeric(boundary_polygon)
bounding_polygon_utm=ensure_numeric(bounding_polygon_utm)
#plot(lat_long_points[:,0],lat_long_points[:,1],'o')
plot(boundary_polygon[:,0], boundary_polygon[:,1])
plot(bounding_polygon_utm[:,0],bounding_polygon_utm[:,1])
show()
assert num.allclose(bounding_polygon_utm,boundary_polygon)
extent_res=1000000
meshname = 'urs_test_mesh' + '.tsh'
interior_regions=None
boundary_tags={'ocean': [0,1], 'otherocean': [2,3,4]}
# have to change boundary tags from last example because now bounding
# polygon starts in different place.
create_mesh_from_regions(boundary_polygon,
boundary_tags=boundary_tags,
maximum_triangle_area=extent_res,
filename=meshname,
interior_regions=interior_regions,
verbose=False)
domain_fbound = Domain(meshname)
domain_fbound.set_quantity('stage', tide)
Bf = File_boundary(sts_file+'.sts',
domain_fbound,
boundary_polygon=boundary_polygon)
Br = Reflective_boundary(domain_fbound)
domain_fbound.set_boundary({'ocean': Bf,'otherocean': Br})
finaltime=time_step*(time_step_count-1)
yieldstep=time_step
temp_fbound=num.zeros(int(finaltime/yieldstep)+1,num.float)
for i, t in enumerate(domain_fbound.evolve(yieldstep=yieldstep,
finaltime=finaltime,
skip_initial_step=False)):
temp_fbound[i]=domain_fbound.quantities['stage'].centroid_values[2]
domain_time = Domain(meshname)
domain_time.set_quantity('stage', tide)
Br = Reflective_boundary(domain_time)
Bw = Time_boundary(domain=domain_time,
function=lambda t: [num.sin(t)+tide,3.*(20.+num.sin(t)+tide),2.*(20.+num.sin(t)+tide)])
domain_time.set_boundary({'ocean': Bw,'otherocean': Br})
temp_time=num.zeros(int(finaltime/yieldstep)+1,num.float)
domain_time.set_starttime(domain_fbound.get_starttime())
for i, t in enumerate(domain_time.evolve(yieldstep=yieldstep,
finaltime=finaltime,
skip_initial_step=False)):
temp_time[i]=domain_time.quantities['stage'].centroid_values[2]
assert num.allclose(temp_fbound, temp_time)
assert num.allclose(domain_fbound.quantities['stage'].vertex_values,
domain_time.quantities['stage'].vertex_values)
assert num.allclose(domain_fbound.quantities['xmomentum'].vertex_values,
domain_time.quantities['xmomentum'].vertex_values)
assert num.allclose(domain_fbound.quantities['ymomentum'].vertex_values,
domain_time.quantities['ymomentum'].vertex_values)
try:
os.remove(sts_file+'.sts')
except:
# Windoze can't remove this file for some reason
pass
os.remove(meshname)
