def run_blast(self, unique_AA_sequences_fasta_path, unique_AA_sequences_names_dict):
self.run.warning("You elected to use NCBI's blastp for amino acid sequence search. Running blastp will \
be significantly slower than DIAMOND (although, anvi'o developers are convinced that \
you *are* doing the right thing, so, kudos to you).")
blast = BLAST(unique_AA_sequences_fasta_path, run=self.run, progress=self.progress,
num_threads=self.num_threads, overwrite_output_destinations=self.overwrite_output_destinations)
blast.names_dict = unique_AA_sequences_names_dict
blast.log_file_path = self.log_file_path
blast.search_output_path = self.get_output_file_path('blast-search-results.txt')
return blast.get_blast_results()
def run_blast(self, unique_AA_sequences_fasta_path,
unique_AA_sequences_names_dict):
self.run.warning(
"You elected to use NCBI's `blastp` for amino acid sequence search. Running blastp will "
"be significantly slower than DIAMOND, but in some cases, slightly more sensitive. "
"We are unsure about whether the slight increase in sensitivity may justify significant "
"increase in run time, but you are the boss.",
lc="cyan")
blast = BLAST(
unique_AA_sequences_fasta_path,
run=self.run,
progress=self.progress,
num_threads=self.num_threads,
overwrite_output_destinations=self.overwrite_output_destinations)
blast.names_dict = unique_AA_sequences_names_dict
blast.log_file_path = self.log_file_path
blast.search_output_path = self.get_output_file_path(
'blast-search-results.txt')
return blast.get_blast_results()