__author__ = "A. Murat Eren"
__copyright__ = "Copyright 2015, The anvio Project"
__credits__ = []
__license__ = "GPL 3.0"
__version__ = anvio.__version__
__maintainer__ = "A. Murat Eren"
__email__ = "*****@*****.**"
__status__ = "Development"
# Mock progress object that will not report anything, for general clarity.
progress = Progress()
progress.verbose = False
run = Run()
run.verbose = False
def rev_comp(seq):
return seq.translate(complements)[::-1]
class Multiprocessing:
def __init__(self, target_function, num_thread = None):
self.cpu_count = multiprocessing.cpu_count()
self.num_thread = num_thread or (self.cpu_count - (int(round(self.cpu_count / 10.0)) or 1))
self.target_function = target_function
self.processes = []
self.manager = multiprocessing.Manager()
def get_data_chunks(self, data_array, spiral = False):
__author__ = "A. Murat Eren"
__copyright__ = "Copyright 2015, The anvio Project"
__credits__ = []
__license__ = "GPL 3.0"
__version__ = anvio.__version__
__maintainer__ = "A. Murat Eren"
__email__ = "*****@*****.**"
__status__ = "Development"
# Mock progress object that will not report anything, for general clarity.
progress = Progress()
progress.verbose = False
run = Run()
run.verbose = False
def rev_comp(seq):
return seq.translate(complements)[::-1]
class Multiprocessing:
def __init__(self, target_function, num_thread=None):
self.cpu_count = multiprocessing.cpu_count()
self.num_thread = num_thread or (self.cpu_count - (int(round(self.cpu_count / 10.0)) or 1))
self.target_function = target_function
self.processes = []
self.manager = multiprocessing.Manager()
def get_data_chunks(self, data_array, spiral=False):
