def test_bgc_profiles(self):
filename = 'IMOS_ANMN-NRS_CDEKOSTUZ_20121113T001841Z_NRSMAI_FV00_Profile-SBE-19plus_C-20151030T034432Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSMAI',
'featureType': 'profile'
},
TEMP={},
PRES={},
CNDC={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir,
'IMOS/ANMN/NRS/NRSMAI/Biogeochem_profiles/non-QC')
self.assertEqual(dest_filename, filename)
filename = 'IMOS_ANMN-WA_CDEKOSTUZ_20121113T013800Z_WACA20_FV01_3052.0-1-SBE19plus-70_C-20140211T090215Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'WACA20',
'featureType': 'profile'
},
TEMP={},
PRES_REL={},
PSAL={},
DOX2={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir, 'IMOS/ANMN/WA/WACA20/Biogeochem_profiles')
self.assertEqual(dest_filename, filename)
def test_velocity(self):
filename = 'IMOS_ANMN-NRS_AETVZ_20150703T053000Z_NRSROT-ADCP_FV01_NRSROT-ADCP-1507-Workhorse-ADCP-43_END-20151023T034500Z_C-20151117T074309Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {'site_code': 'NRSROT'},
TEMP={},
PRES_REL={},
DEPTH={},
UCUR={},
VCUR={},
WCUR={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir, 'IMOS/ANMN/NRS/NRSROT/Velocity')
self.assertEqual(dest_filename, filename)
filename = 'IMOS_ANMN-NRS_AETVZ_20150703T053000Z_NRSROT-ADCP_FV00_NRSROT-ADCP-1507-Workhorse-ADCP-43_END-20151023T034500Z_C-20151117T074309Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {'site_code': 'NRSROT'},
UCUR_MAG={},
VCUR_MAG={},
CSPD={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir, 'IMOS/ANMN/NRS/NRSROT/Velocity/non-QC')
self.assertEqual(dest_filename, filename)
def test_bgc_timeseries(self):
filename = 'IMOS_ANMN-NRS_KOSTUZ_20150330T080039Z_NRSROT_FV01_NRSROT-1503-WQM-55_END-20150727T063234Z_C-20150731T040136Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSROT',
'featureType': 'timeSeries'
},
TEMP={},
PRES_REL={},
DEPTH={},
PSAL={},
DOX2={},
CPHL={},
TURB={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir,
'IMOS/ANMN/NRS/NRSROT/Biogeochem_timeseries')
self.assertEqual(dest_filename, filename)
filename = 'IMOS_ANMN-QLD_KUZ_20150328T203001Z_GBROTE_FV01_GBROTE-1503-ECO-FLNTUSB-18_END-20151013T030538Z_C-20160225T042413Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'GBROTE',
'featureType': 'timeseries'
},
DEPTH={},
CPHL={},
TURB={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir,
'IMOS/ANMN/QLD/GBROTE/Biogeochem_timeseries')
self.assertEqual(dest_filename, filename)
def test_unknown_product(self):
filename = 'IMOS_ANMN-NRS_STZ_20170101T000000Z_NRSMAI_FV02.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSMAI',
'featureType': 'timeSeriesProfile'
},
TEMP={},
PSAL={})
with self.assertRaisesRegex(
InvalidFileNameError,
r"Can't determine product type from file name"):
MooringsFileClassifier.dest_path(testfile)
def test_long_timeseries(self):
filename = 'IMOS_ANMN-NRS_STZ_19441015T000000Z_NRSMAI_FV02_NRSMAI-long-timeseries_END-20140703T000000Z_C-20160525T064856Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSMAI',
'featureType': 'timeSeriesProfile'
},
TEMP={},
PSAL={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir, 'IMOS/ANMN/NRS/NRSMAI/aggregated_products')
self.assertEqual(dest_filename, filename)
def test_wave(self):
filename = 'IMOS_ANMN-NRS_WZ_20140914T075900Z_NRSDAR_FV01_NRSDAR-1409-SUB-Workhorse-ADCP-24.3_END-20150205T225900Z_C-20150326T055936Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSDAR',
'featureType': 'doesntmatter'
},
DEPTH={},
VAVH={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir, 'IMOS/ANMN/NRS/NRSDAR/Wave')
self.assertEqual(dest_filename, filename)
def test_eco_parsb(self):
filename = (
'IMOS_ANMN-QLD_FZ_20180514T083000Z_GBRPPS_FV01_GBRPPS-1805-ECO-PARSB-26.5_END-20181110T074743Z'
'_C-20190807T070104Z.nc')
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'GBRPPS',
'featureType': 'timeseries'
},
PAR={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir,
'IMOS/ANMN/QLD/GBRPPS/Biogeochem_timeseries')
self.assertEqual(dest_filename, filename)
def test_eco_bb2flwb(self):
filename = (
'IMOS_ANMN-NRS_EKZ_20130125T140759Z_NRSROT_FV01_NRSROT-1301-ECO-BB2FLWB-21_END-20130520T135245Z'
'_C-20191115T024327Z.nc')
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSROT',
'featureType': 'timeseries'
},
CDOM={},
VSF470={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(dest_dir,
'IMOS/ANMN/NRS/NRSROT/Biogeochem_timeseries')
self.assertEqual(dest_filename, filename)
def test_burst_averaged(self):
filename = 'IMOS_ANMN-NRS_KOSTUZ_20140808T080100Z_NRSROT_FV02_NRSROT-1408-WQM-55-burst-averaged_END-20141215T234700Z_C-20150319T075400Z.nc'
testfile = os.path.join(self.tempdir, filename)
make_test_file(testfile, {
'site_code': 'NRSROT',
'featureType': 'timeSeries'
},
TEMP={},
PRES_REL={},
DEPTH={},
PSAL={},
DOX2={},
CPHL={},
TURB={})
dest_dir, dest_filename = os.path.split(
MooringsFileClassifier.dest_path(testfile))
self.assertEqual(
dest_dir,
'IMOS/ANMN/NRS/NRSROT/Biogeochem_timeseries/burst-averaged')
self.assertEqual(dest_filename, filename)
def get_input_file_rel_path(input_netcdf_file_path):
"""
find the relative path hierarchy of an input FV01 file. The value will be
used in a gatt of the burst netcdf file
"""
return MooringsFileClassifier.dest_path(input_netcdf_file_path)
