def getRMeasureData(self, volumeDensity):
volPath = os.path.join(self.params['rundir'], volumeDensity)
if not os.path.exists(volPath):
apDisplay.printWarning("R Measure failed, volume density not found: "+volPath)
return None
resolution = apRecon.runRMeasure(self.apix, volPath)
if resolution is None:
return None
rmesq = appiondata.ApRMeasureData()
rmesq['volume']=os.path.basename(volumeDensity)
rmesq['rMeasure']=resolution
return rmesq
def getRMeasureData(self, iteration):
volumeDensity='threed.'+iteration['num']+'a.mrc'
volPath = os.path.join(self.params['rundir'], volumeDensity)
if not os.path.exists(volPath):
apDisplay.printWarning("R Measure failed, volume density not found: "+volPath)
return None
resolution = apRecon.runRMeasure(self.params['apix'], volPath)
if resolution is None:
return None
rmesq=appiondata.ApRMeasureData()
rmesq['volume']=volumeDensity
rmesq['rMeasure']=resolution
return rmesq
def getRMeasureData(self, iteration, reference_number=1):
''' run rMeasure resolution and return database object '''
volumeDensity = os.path.join(self.resultspath, "recon_%s_it%.3d_vol%.3d.mrc" \
% (self.params['timestamp'], iteration, reference_number))
if not os.path.exists(volumeDensity):
apDisplay.printWarning(
"R Measure failed, volume density not found: " + volumeDensity)
return None
resolution = apRecon.runRMeasure(self.runparams['apix'], volumeDensity)
if resolution is None:
return None
### database object
rmesq = appiondata.ApRMeasureData()
rmesq['volume'] = "recon_%s_it%.3d_vol%.3d.mrc" % (
self.params['timestamp'], iteration, reference_number)
rmesq['rMeasure'] = resolution
return rmesq