def test_union_patterns_empty_test():
filename = 'config/i2b2_2016_track-1.conf'
score_values = ['(Patient|Provider)']
namespaces , document_data , ref_patterns = \
args_and_configs.process_config( config_file = filename ,
score_key = 'Short Name' ,
score_values = score_values )
score_values = ['I.Do.No.Exist']
namespaces , document_data , test_patterns = \
args_and_configs.process_config( config_file = filename ,
score_key = 'Short Name' ,
score_values = score_values )
ref_patterns , test_patterns = \
args_and_configs.align_patterns( ref_patterns , test_patterns )
for ref_pattern in ref_patterns:
match_flag = False
for test_pattern in test_patterns:
if (test_pattern['type'] == ref_pattern['type']):
match_flag = True
test_pattern['type'] == ref_pattern['type']
break
if (match_flag == False):
assert ref_pattern['type'] == False
for test_pattern in test_patterns:
match_flag = False
for ref_pattern in ref_patterns:
if (test_pattern['type'] == ref_pattern['type']):
match_flag = True
test_pattern['type'] == ref_pattern['type']
break
if (match_flag == False):
assert test_pattern['type'] == False
score_values = args.score_values ,
collapse_all_patterns = args.collapse_all_patterns ,
verbose = args.verbose )
except:
e = sys.exc_info()[0]
log.error(
'Uncaught exception in process_config for system output config: {}'
.format(e))
if (test_patterns == []):
log.error(
'No test patterns extracted from config. Bailing out now.')
exit(1)
if (args.reference_input and args.test_input):
try:
reference_patterns , test_patterns = \
args_and_configs.align_patterns( reference_patterns , test_patterns )
if (len(reference_patterns) == 0):
log.error(
'Zero annotation patterns found in reference config after filtering against system output config.'
)
exit(1)
if (len(test_patterns) == 0):
log.error(
'Zero annotation patterns found in system output config after filtering against reference config.'
)
exit(1)
except:
e = sys.exc_info()[0]
log.error('Uncaught exception in align_patterns: {}'.format(e))
## Get the intersection of attributes defined in the ref and sys patterns
## along with those listed in the --score-attributes argument