def test_lookup_succeed_grhc38(grch38_lookup):
assert grch38_lookup['rs56116432'] == QueryResult("C", ["T"], False)
def test_query_multi_alt_grch37():
assert query_ensembl("rs60",
"GRCh37") == QueryResult("A", ["G", "T"], True)
def test_query_ensembl_known_rsid_grch37():
assert query_ensembl("rs56116432",
"GRCh37") == QueryResult("C", ["T"], False)
def test_query_ensembl_unknown_minor_grch37():
assert query_ensembl("rs3913290",
"GRCh37") == QueryResult("C", ["T"], None)
def test_lookup_table_load(lookup_table):
lookup = RSLookup.from_path(lookup_table, "GRCh37")
assert lookup._RSLookup__rsids == {
"rs776746": QueryResult("C", ["T"], False),
"rs497692": QueryResult("T", ["C"], False),
"rs12248560": QueryResult("C", ["A", "T"], False),
"rs768983": QueryResult("C", ["T"], False),
"rs2032598": QueryResult("T", ["C"], False),
"rs1884213": QueryResult("T", ["C"], True),
"rs1633021": QueryResult("T", ["C"], False),
"rs4735258": QueryResult("T", ["C"], False),
"rs10373": QueryResult("A", ["G"], True),
"rs2819561": QueryResult("A", ["G"], True),
"rs7514030": QueryResult("T", ["C"], False),
"rs7300444": QueryResult("C", ["T"], False),
"rs622272": QueryResult("T", ["G"], True),
"rs629562": QueryResult("A", ["G"], True),
"rs2249028": QueryResult("G", ["A"], False),
"rs2711823": QueryResult("G", ["A"], False),
"rs1381532": QueryResult("A", ["G"], True),
"rs4148973": QueryResult("T", ["G"], True),
"rs2942": QueryResult("G", ["A"], True),
"rs1019433": QueryResult("G", ["A"], False),
"rs1037256": QueryResult("G", ["A", "C", "T"], True),
"rs6124288": QueryResult("T", ["C"], False),
"rs10203363": QueryResult("C", ["T"], False),
"rs2229546": QueryResult("C", ["A", "G", 'T'], True),
"rs4577050": QueryResult("G", ["A"], True),
"rs9962023": QueryResult("T", ["C"], True),
"rs9532292": QueryResult("A", ["G"], False),
"rs10421632": QueryResult("G", ["A"], False),
"rs4688963": QueryResult("T", ["C"], False),
"rs2844682": QueryResult("G", ["A"], False),
"rs1410592": QueryResult("G", ["A", "T"], True),
"rs2228611": QueryResult("T", ["C"], True),
"rs5993935": QueryResult("T", ["C"], False),
"rs309557": QueryResult("T", ["C"], False),
"rs2070203": QueryResult("G", ["A"], False),
"rs8024825": QueryResult("A", ["G"], False),
"rs9528543": QueryResult("A", ['G'], False),
"rs9361875": QueryResult("C", ["T"], False),
"rs9837496": QueryResult("C", ["A", "T"], False),
"rs10965655": QueryResult("T", ["C"], False),
"rs357004": QueryResult("A", ["G"], True),
"rs998132": QueryResult("G", ["A"], False),
"rs4675": QueryResult("T", ["C"], True),
"rs17548783": QueryResult("T", ["C"], False),
"rs17686195": QueryResult("T", ["C"], False),
"rs17476242": QueryResult("G", ["A"], False),
"rs2297995": QueryResult("G", ["A"], True),
"rs349047": QueryResult("G", ["A"], False),
"rs3912984": QueryResult("T", ["C"], True),
"rs4617548": QueryResult("A", ["G"], True),
"rs3913290": QueryResult("C", ["T"], None),
"rs1147504": QueryResult("G", ["A"], True),
"rs10883099": QueryResult("G", ["A"], True),
"rs2395029": QueryResult("T", ["G"], False),
"rs2980300": QueryResult("T", ["C"], True),
"rs10907175": QueryResult("A", ["C"], False),
"rs2887286": QueryResult("T", ["C"], True),
"rs307378": QueryResult("T", ["A", "G"], True),
"rs6696609": QueryResult("C", ["G", "T"], False),
"rs3737728": QueryResult("A", ["C", "G", "T"], True),
"rs12939215": QueryResult("A", ["C"], None)
}