def test_in_database_through_build_new_FWs(self):
ft = FragmentMolecule(molecule=self.pc_frag1,
edges=self.pc_frag1_edges,
depth=0)
ft.mol = ft.get("molecule")
ft.depth = ft.get("depth")
ft.charges = [-1, 0, 1]
ft.do_triplets = False
ft.linked = False
ft.qchem_input_params = {}
pc_frag1_edges = {(e[0], e[1]): None for e in self.pc_frag1_edges}
mol_graph = MoleculeGraph.with_edges(self.pc_frag1, pc_frag1_edges)
unique_frag_dict = mol_graph.build_unique_fragments()
unique_frag_list = []
for key in unique_frag_dict:
for frag in unique_frag_dict[key]:
unique_frag_list.append(frag)
ft.unique_fragments = unique_frag_list
ft._build_unique_relevant_molecules()
docs = loadfn(os.path.join(module_dir, "doc.json"))
for doc in docs:
doc["input"]["initial_molecule"] = doc["input"][
"initial_molecule"].as_dict()
ft.all_relevant_docs = docs
new_FWs = ft._build_new_FWs()
self.assertEqual(len(new_FWs), 29)
def test_build_new_FWs(self):
ft = FragmentMolecule(molecule=self.pc_frag1, edges=self.pc_frag1_edges, depth=0)
ft.mol = ft.get("molecule")
ft.depth = ft.get("depth")
ft.charges = [-1, 0, 1]
ft.do_triplets = False
ft.linked = False
ft.qchem_input_params = {}
pc_frag1_edges = {(e[0], e[1]): None for e in self.pc_frag1_edges}
mol_graph = MoleculeGraph.with_edges(self.pc_frag1, pc_frag1_edges)
unique_frag_dict = mol_graph.build_unique_fragments()
unique_frag_list = []
for key in unique_frag_dict:
for frag in unique_frag_dict[key]:
unique_frag_list.append(frag)
ft.unique_fragments = unique_frag_list
ft._build_unique_relevant_molecules()
ft.all_relevant_docs = list()
new_FWs = ft._build_new_FWs()
self.assertEqual(len(new_FWs), 36)