def parse_file(filename):
"""
parse a file and create a set of authors
:param filename: file to parse
:return: set of author elements
"""
authors = set()
firstline = True # ignore the first line
with open(filename, 'r') as f:
for l in f:
if firstline:
firstline = False
continue
p = l.rstrip().split("\t")
if len(p) < 15:
sys.stderr.write("ERROR: Malformed: {}\t{}\n".format(len(p), p))
continue
auth = Author(p[2])
try:
if p[1]:
auth.orcid = p[1]
if p[3]:
auth.lastname = p[3]
auth.lastnamelower = p[3].lower()
if p[4]:
auth.firstname = p[4]
auth.firstnamelower = p[4].lower()
if p[5]:
auth.middleinitial = p[5]
if p[6]:
auth.email = p[6].replace(' ', '')
if p[14]:
auth.order = int(p[14])
if p[15]:
auth.contribution = p[15]
primary = Address()
if p[7]:
primary.department = p[7]
if p[8]:
primary.institution = p[8]
if p[9]:
primary.street = p[9]
if p[10]:
primary.city = p[10]
if p[11]:
primary.state = p[11]
if p[12]:
primary.zip = p[12]
if p[13]:
primary.country = p[13]
auth.primaryaddress = primary
secondary = Address()
if len(p) > 17 and p[17]:
secondary.department = p[17]
if len(p) > 18 and p[18]:
secondary.institution = p[18]
if len(p) > 19 and p[19]:
secondary.street = p[19]
if len(p) > 20 and p[20]:
secondary.city = p[20]
if len(p) > 21 and p[21]:
secondary.state = p[21]
if len(p) > 22 and p[22]:
secondary.zip = p[22]
if len(p) > 23 and p[23]:
secondary.country = p[23]
if secondary.is_valid():
auth.secondaryaddress = secondary
except Exception as err:
sys.stderr.write("Error parsing {}: {}\n".format(p[2], err))
continue
authors.add(auth)
return authors
def parse_file(filename):
"""
parse a file and create a set of authors
:param filename: file to parse
:return: set of author elements
"""
authors = set()
firstline = True # ignore the first line
with open(filename, 'r') as f:
for l in f:
if firstline:
firstline = False
continue
p = l.rstrip().split("\t")
if len(p) < 15:
sys.stderr.write("ERROR: Malformed: {}\t{}\n".format(
len(p), p))
continue
auth = Author(p[2])
try:
if p[1]:
auth.orcid = p[1]
if p[3]:
auth.lastname = p[3]
auth.lastnamelower = p[3].lower()
if p[4]:
auth.firstname = p[4]
auth.firstnamelower = p[4].lower()
if p[5]:
auth.middleinitial = p[5]
if p[6]:
auth.email = p[6].replace(' ', '')
if p[14]:
auth.order = int(p[14])
if p[15]:
auth.contribution = p[15]
primary = Address()
if p[7]:
primary.department = p[7]
if p[8]:
primary.institution = p[8]
if p[9]:
primary.street = p[9]
if p[10]:
primary.city = p[10]
if p[11]:
primary.state = p[11]
if p[12]:
primary.zip = p[12]
if p[13]:
primary.country = p[13]
auth.primaryaddress = primary
secondary = Address()
if len(p) > 17 and p[17]:
secondary.department = p[17]
if len(p) > 18 and p[18]:
secondary.institution = p[18]
if len(p) > 19 and p[19]:
secondary.street = p[19]
if len(p) > 20 and p[20]:
secondary.city = p[20]
if len(p) > 21 and p[21]:
secondary.state = p[21]
if len(p) > 22 and p[22]:
secondary.zip = p[22]
if len(p) > 23 and p[23]:
secondary.country = p[23]
if secondary.is_valid():
auth.secondaryaddress = secondary
except Exception as err:
sys.stderr.write("Error parsing {}: {}\n".format(p[2], err))
continue
authors.add(auth)
return authors
