def _apply_default_pipeline_settings(pipeline):
from autoPyTorch.pipeline.nodes.network_selector import NetworkSelector
from autoPyTorch.pipeline.nodes.loss_module_selector import LossModuleSelector
from autoPyTorch.pipeline.nodes.metric_selector import MetricSelector
from autoPyTorch.pipeline.nodes.train_node import TrainNode
from autoPyTorch.pipeline.nodes.cross_validation import CrossValidation
import torch.nn as nn
from autoPyTorch.components.metrics.standard_metrics import multilabel_accuracy
from autoPyTorch.components.preprocessing.loss_weight_strategies import LossWeightStrategyWeightedBinary
AutoNetFeatureData._apply_default_pipeline_settings(pipeline)
net_selector = pipeline[NetworkSelector.get_name()]
net_selector.add_final_activation('sigmoid', nn.Sigmoid())
loss_selector = pipeline[LossModuleSelector.get_name()]
loss_selector.add_loss_module('bce_with_logits', nn.BCEWithLogitsLoss,
None, False)
loss_selector.add_loss_module('bce_with_logits_weighted',
nn.BCEWithLogitsLoss,
LossWeightStrategyWeightedBinary(),
False)
metric_selector = pipeline[MetricSelector.get_name()]
metric_selector.add_metric('multilabel_accuracy', multilabel_accuracy)
train_node = pipeline[TrainNode.get_name()]
train_node.default_minimize_value = False
cv = pipeline[CrossValidation.get_name()]
cv.use_stratified_cv_split_default = False
def _apply_default_pipeline_settings(pipeline):
from autoPyTorch.pipeline.nodes.network_selector import NetworkSelector
from autoPyTorch.pipeline.nodes.loss_module_selector import LossModuleSelector
from autoPyTorch.pipeline.nodes.metric_selector import MetricSelector
from autoPyTorch.pipeline.nodes.train_node import TrainNode
from autoPyTorch.pipeline.nodes.cross_validation import CrossValidation
import torch.nn as nn
from autoPyTorch.components.metrics.standard_metrics import mean_distance
AutoNetFeatureData._apply_default_pipeline_settings(pipeline)
net_selector = pipeline[NetworkSelector.get_name()]
net_selector.add_final_activation('none', nn.Sequential())
loss_selector = pipeline[LossModuleSelector.get_name()]
loss_selector.add_loss_module('l1_loss', nn.L1Loss)
metric_selector = pipeline[MetricSelector.get_name()]
metric_selector.add_metric('mean_distance', mean_distance)
train_node = pipeline[TrainNode.get_name()]
train_node.default_minimize_value = True
cv = pipeline[CrossValidation.get_name()]
cv.use_stratified_cv_split_default = False
def _apply_default_pipeline_settings(pipeline):
from autoPyTorch.pipeline.nodes.network_selector import NetworkSelector
from autoPyTorch.pipeline.nodes.loss_module_selector import LossModuleSelector
from autoPyTorch.pipeline.nodes.metric_selector import MetricSelector
from autoPyTorch.pipeline.nodes.train_node import TrainNode
from autoPyTorch.pipeline.nodes.resampling_strategy_selector import ResamplingStrategySelector
from autoPyTorch.pipeline.nodes.cross_validation import CrossValidation
from autoPyTorch.pipeline.nodes.one_hot_encoding import OneHotEncoding
from autoPyTorch.pipeline.nodes.resampling_strategy_selector import ResamplingStrategySelector
from autoPyTorch.components.preprocessing.resampling import RandomOverSamplingWithReplacement, RandomUnderSamplingWithReplacement, SMOTE, \
TargetSizeStrategyAverageSample, TargetSizeStrategyDownsample, TargetSizeStrategyMedianSample, TargetSizeStrategyUpsample
import torch.nn as nn
from autoPyTorch.components.metrics.standard_metrics import accuracy
from autoPyTorch.components.preprocessing.loss_weight_strategies import LossWeightStrategyWeighted
AutoNetFeatureData._apply_default_pipeline_settings(pipeline)
net_selector = pipeline[NetworkSelector.get_name()]
net_selector.add_final_activation('softmax', nn.Softmax(1))
loss_selector = pipeline[LossModuleSelector.get_name()]
loss_selector.add_loss_module('cross_entropy', nn.CrossEntropyLoss,
None, True)
loss_selector.add_loss_module('cross_entropy_weighted',
nn.CrossEntropyLoss,
LossWeightStrategyWeighted(), True)
metric_selector = pipeline[MetricSelector.get_name()]
metric_selector.add_metric('accuracy', accuracy)
resample_selector = pipeline[ResamplingStrategySelector.get_name()]
resample_selector.add_over_sampling_method(
'random', RandomOverSamplingWithReplacement)
resample_selector.add_over_sampling_method('smote', SMOTE)
resample_selector.add_under_sampling_method(
'random', RandomUnderSamplingWithReplacement)
resample_selector.add_target_size_strategy('upsample',
TargetSizeStrategyUpsample)
resample_selector.add_target_size_strategy(
'downsample', TargetSizeStrategyDownsample)
resample_selector.add_target_size_strategy(
'average', TargetSizeStrategyAverageSample)
resample_selector.add_target_size_strategy(
'median', TargetSizeStrategyMedianSample)
train_node = pipeline[TrainNode.get_name()]
train_node.default_minimize_value = False
cv = pipeline[CrossValidation.get_name()]
cv.use_stratified_cv_split_default = True
one_hot_encoding_node = pipeline[OneHotEncoding.get_name()]
one_hot_encoding_node.encode_Y = True
return pipeline