def _create_db(self) -> Tuple[JSONs, str]:
"""
Write hardcoded portal integrations DB to S3.
:return: Newly created DB and accompanying version.
"""
catalog = config.default_catalog
plugin = RepositoryPlugin.load(catalog).create(catalog)
db = self.demultiplex(plugin.portal_db())
version = self._write_db(db, None)
return db, version
def main(argv):
configure_script_logging(logger)
import argparse
parser = argparse.ArgumentParser(
description='Subscribe indexer lambda to bundle events from DSS')
parser.add_argument('--unsubscribe',
'-U',
dest='subscribe',
action='store_false',
default=True)
parser.add_argument(
'--personal',
'-p',
dest='shared',
action='store_false',
default=True,
help=
"Do not use the shared credentials of the Google service account that represents the "
"current deployment, but instead use personal credentials for authenticating to the DSS. "
"When specifying this option you will need to a) run `hca dss login` prior to running "
"this script or b) set GOOGLE_APPLICATION_CREDENTIALS to point to another service "
"account's credentials. Note that this implies that the resulting DSS subscription will "
"be owned by a) you or b) the other service account and that only a) you or b) someone "
"in possession of those credentials can modify the subscription in the future. This is "
"typically not what you'd want.")
options = parser.parse_args(argv)
dss_client = azul.dss.client()
for catalog in config.catalogs:
plugin = RepositoryPlugin.load(catalog)
if isinstance(plugin, dss.Plugin):
if options.shared:
with aws.service_account_credentials(
config.ServiceAccount.indexer):
subscription.manage_subscriptions(
plugin, dss_client, subscribe=options.subscribe)
else:
subscription.manage_subscriptions(plugin,
dss_client,
subscribe=options.subscribe)
def main(argv):
parser = argparse.ArgumentParser(description=__doc__, formatter_class=AzulArgumentHelpFormatter)
default_catalog = config.default_catalog
plugin_cls = RepositoryPlugin.load(default_catalog)
plugin = plugin_cls.create(default_catalog)
if len(plugin.sources) == 1:
source_arg = {'default': str(one(plugin.sources))}
else:
source_arg = {'required': True}
parser.add_argument('--source', '-s',
**source_arg,
help='The repository source containing the bundle')
parser.add_argument('--uuid', '-b',
required=True,
help='The UUID of the bundle to can.')
parser.add_argument('--version', '-v',
help='The version of the bundle to can (default: the latest version).')
parser.add_argument('--output-dir', '-O',
default=os.path.join(config.project_root, 'test', 'indexer', 'data'),
help='The path to the output directory (default: %(default)s).')
args = parser.parse_args(argv)
bundle = fetch_bundle(args.source, args.uuid, args.version)
save_bundle(bundle, args.output_dir)
def repository_plugin(self, catalog: CatalogName) -> RepositoryPlugin:
return RepositoryPlugin.load(catalog).create(catalog)
def plugin_for(catalog):
return RepositoryPlugin.load(catalog).create(catalog)
def plugin_db(self) -> JSONs:
# Must be lazy so the mock catalog's repository plugin is used
catalog = config.default_catalog
plugin = RepositoryPlugin.load(catalog).create(catalog)
return plugin.portal_db()
def default_db(self) -> JSONs:
# FIXME: Parameterize PortalService instances with current catalog
# https://github.com/DataBiosphere/azul/issues/2716
catalog = config.default_catalog
plugin = RepositoryPlugin.load(catalog).create(catalog)
return self.demultiplex(plugin.portal_db())
def repository_plugin(self) -> RepositoryPlugin:
catalog = self.catalog
return RepositoryPlugin.load(catalog).create(catalog)
