def show_multiple_uverskyPlot2(
SeqParam_list,
label_list=[],
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plots multiple sequences on the Uversky plot (hydropathy vs. mean net charge) and shows the plot on the screen.
This function takes a list of SequenceParameter objects instead of the actual values
INPUT:
--------------------------------------------------------------------------------
SeqParam_list | List of sequence parameter objects
label_list | List of labels for each sequence (empty = no list)
title | Plot title (DEFAULT = "Uversky plot")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a Uversky plot with multiple points should appear on the screen
"""
# construct the fraction positive and negative vectors
hydropathy_list = []
mean_net_charge_list = []
for seq in SeqParam_list:
hydropathy_list.append(seq.get_uversky_hydropathy())
mean_net_charge_list.append(seq.get_mean_net_charge())
return plotting.show_multiple_uverskyPlot(
hydropathy_list,
mean_net_charge_list,
label_list,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_multiple_uverskyPlot2(SeqParam_list,
label_list=[],
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plots multiple sequences on the Uversky plot (hydropathy vs. mean net charge) and shows the plot on the screen.
This function takes a list of SequenceParameter objects instead of the actual values
INPUT:
--------------------------------------------------------------------------------
SeqParam_list | List of sequence parameter objects
label_list | List of labels for each sequence (empty = no list)
title | Plot title (DEFAULT = "Uversky plot")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a Uversky plot with multiple points should appear on the screen
"""
# construct the fraction positive and negative vectors
hydropathy_list = []
mean_net_charge_list = []
for seq in SeqParam_list:
hydropathy_list.append(seq.get_uversky_hydropathy())
mean_net_charge_list.append(seq.get_mean_net_charge())
return plotting.show_multiple_uverskyPlot(hydropathy_list,
mean_net_charge_list, label_list,
title, legendOn, xLim, yLim,
fontSize, getFig)
def show_multiple_uverskyPlot(
hydropathy_list,
mean_net_charge_list,
label_list=[],
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plots multiple sequences on the Uversky plot (hydropathy vs. mean net charge) and shows the plot on the screen.
INPUT:
--------------------------------------------------------------------------------
hydropathy_list | List of proteins' mean hydropathy
mean_net_charge_list | List of the absolute magnitude of the protein's net charge divided by sequence length
label_list | List of labels for each sequence (empty = no list)
title | Plot title (DEFAULT = "Uversky plot")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a Uversky plot with multiple points should appear on the screen
"""
return plotting.show_multiple_uverskyPlot(
hydropathy_list,
mean_net_charge_list,
label_list,
title,
legendOn,
xLim,
yLim,
fontSize,
getFig)
def show_multiple_uverskyPlot(hydropathy_list,
mean_net_charge_list,
label_list=[],
title="Uversky plot",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
getFig=False):
"""
Plots multiple sequences on the Uversky plot (hydropathy vs. mean net charge) and shows the plot on the screen.
INPUT:
--------------------------------------------------------------------------------
hydropathy_list | List of proteins' mean hydropathy
mean_net_charge_list | List of the absolute magnitude of the protein's net charge divided by sequence length
label_list | List of labels for each sequence (empty = no list)
title | Plot title (DEFAULT = "Uversky plot")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
getFig | Returns a matplotlib figure object instead of simply displaying the
| plot on the screen (DEFAULT = False)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but a Uversky plot with multiple points should appear on the screen
"""
return plotting.show_multiple_uverskyPlot(hydropathy_list,
mean_net_charge_list, label_list,
title, legendOn, xLim, yLim,
fontSize, getFig)
