from base import report_content_to_test_docs
_TEST_IMMUNIZATIONS = [
"""
<Immunization xmlns='http://indivo.org/vocab/xml/documents#'>
<dateAdministered>2009-05-16T00:00:00Z</dateAdministered>
<administeredBy>Children's Hospital Boston</administeredBy>
<vaccine>
<type type='http://codes.indivo.org/codes/vaccinetypes/' value='hep-B' abbrev='hepb'>Hepatitis B</type>
<manufacturer>Oolong Pharmaceuticals</manufacturer>
<lot>AZ1234567</lot>
<expiration>2009-06-01</expiration>
</vaccine>
<sequence>2</sequence>
<anatomicSurface type='http://codes.indivo.org/codes/anatomicsurfaces/' value='shoulder' abbrev='shoulder'>Shoulder</anatomicSurface>
<adverseEvent>pain and rash</adverseEvent>
</Immunization>
""",
"""
<Immunization xmlns='http://indivo.org/vocab/xml/documents#'>
<dateAdministered>2008-05-12T00:00:00Z</dateAdministered>
<vaccine>
<type type='http://codes.indivo.org/codes/vaccinetypes/' value='82' abbrev='adenovirus, NOS'>adenovirus vaccine, NOS</type>
</vaccine>
<sequence>2</sequence>
</Immunization>
""",
]
TEST_IMMUNIZATIONS = report_content_to_test_docs(_TEST_IMMUNIZATIONS)
from base import report_content_to_test_docs
_TEST_VITALS = [
"""
<VitalSign xmlns='http://indivo.org/vocab/xml/documents#'>
<dateMeasured>2009-05-16T15:23:21Z</dateMeasured>
<name type='http://codes.indivo.org/vitalsigns/' value='123' abbrev='BPsys'>Blood Pressure Systolic</name>
<value>145</value>
<unit type='http://codes.indivo.org/units/' value='31' abbrev='mmHg'>millimeters of mercury</unit>
<site>left arm</site>
<position>sitting down</position>
</VitalSign>
""",
"""
<VitalSign xmlns='http://indivo.org/vocab/xml/documents#'>
<dateMeasured>2009-05-16T15:23:21Z</dateMeasured>
<name type='http://codes.indivo.org/vitalsigns/' value='123' abbrev='weight'>weight test</name>
<value>185</value>
<unit type='http://codes.indivo.org/units/' value='31' abbrev='lbs'>pounds</unit>
<site />
<position />
</VitalSign>
""",
]
TEST_VITALS = report_content_to_test_docs(_TEST_VITALS)
<Field name="quantitative_result_non_critical_range_min_value">120</Field>
<Field name="quantitative_result_non_critical_range_min_unit">mEq/L</Field>
<Field name="quantitative_result_normal_range_max_value">145</Field>
<Field name="quantitative_result_normal_range_max_unit">mEq/L</Field>
<Field name="quantitative_result_normal_range_min_value">135</Field>
<Field name="quantitative_result_normal_range_min_unit">mEq/L</Field>
<Field name="quantitative_result_value_value">140</Field>
<Field name="quantitative_result_value_unit">mEq/L</Field>
<Field name="collected_at">2010-12-27T17:00:00Z</Field>
<Field name="collected_by_org_name">City Lab</Field>
<Field name="collected_by_org_adr_country">USA</Field>
<Field name="collected_by_org_adr_city">Springfield</Field>
<Field name="collected_by_org_adr_postalcode">11111</Field>
<Field name="collected_by_org_adr_region">MA</Field>
<Field name="collected_by_org_adr_street">20 Elm St</Field>
<Field name="collected_by_name_family">Finnialispi</Field>
<Field name="collected_by_name_given">Tad</Field>
<Field name="collected_by_role">Lab Specialist</Field>
</Model>
</Models>
""",
]
TEST_LABS = report_content_to_test_docs(_TEST_LABS)
from base import report_content_to_test_docs
_TEST_EQUIPMENT = [
"""
<Equipment xmlns='http://indivo.org/vocab/xml/documents#'>
<dateStarted>2010-09-01</dateStarted>
<name>Tractor</name>
<vendor>John Deer</vendor>
<description>Hello World</description>
</Equipment>
""",
"""
<Equipment xmlns="http://indivo.org/vocab/xml/documents#">
<dateStarted>2010-09-02</dateStarted>
<name>cane</name>
</Equipment>
"""
]
TEST_EQUIPMENT = report_content_to_test_docs(_TEST_EQUIPMENT)
<Field name="severity_identifier">24484000</Field>
<Monkey name="woahthere">THIS SHOULDN'T BE THERE</Monkey>
</Model>
</Models>
""",
]
_TEST_ALLERGIES = [
"""
<Models xmlns='http://indivo.org/vocab/xml/documents#'>
<Model name="Allergy">
<Field name="allergic_reaction_title">Anaphylaxis</Field>
<Field name="allergic_reaction_system">http://purl.bioontology.org/ontology/SNOMEDCT/</Field>
<Field name="allergic_reaction_identifier">39579001</Field>
<Field name="category_title">Drug allergy</Field>
<Field name="category_system">http://purl.bioontology.org/ontology/SNOMEDCT/</Field>
<Field name="category_identifier">416098002</Field>
<Field name="drug_class_allergen_title">Sulfonamide Antibacterial</Field>
<Field name="drug_class_allergen_system">http://purl.bioontology.org/ontology/NDFRT/</Field>
<Field name="drug_class_allergen_identifier">N0000175503</Field>
<Field name="severity_title">Severe</Field>
<Field name="severity_system">http://purl.bioontology.org/ontology/SNOMEDCT/</Field>
<Field name="severity_identifier">24484000</Field>
</Model>
</Models>
""",
]
TEST_ALLERGIES_INVALID = report_content_to_test_docs(_TEST_ALLERGIES_INVALID)
TEST_ALLERGIES = report_content_to_test_docs(_TEST_ALLERGIES)
from base import report_content_to_test_docs
_TEST_PROCEDURES = [
"""
<Procedure xmlns='http://indivo.org/vocab/xml/documents#'>
<datePerformed>2009-05-16T12:00:00Z</datePerformed>
<name type='http://codes.indivo.org/procedures#' value='85' abbrev='append'>Appendectomy</name>
<provider>
<name>Kenneth Mandl</name>
<institution>Children's Hospital Boston</institution>
</provider>
</Procedure>
""",
"""
<Procedure xmlns='http://indivo.org/vocab/xml/documents#'>
<datePerformed>2009-06-16T12:00:00Z</datePerformed>
<name>Appendectomy</name>
<provider>
<name>Kenneth Mandl</name>
<institution>Children's Hospital Boston</institution>
</provider>
</Procedure>
""",
]
TEST_PROCEDURES = report_content_to_test_docs(_TEST_PROCEDURES)
<Field name="quantitative_result_non_critical_range_min_value">120</Field>
<Field name="quantitative_result_non_critical_range_min_unit">mEq/L</Field>
<Field name="quantitative_result_normal_range_max_value">145</Field>
<Field name="quantitative_result_normal_range_max_unit">mEq/L</Field>
<Field name="quantitative_result_normal_range_min_value">135</Field>
<Field name="quantitative_result_normal_range_min_unit">mEq/L</Field>
<Field name="quantitative_result_value_value">140</Field>
<Field name="quantitative_result_value_unit">mEq/L</Field>
<Field name="collected_at">2010-12-27T17:00:00Z</Field>
<Field name="collected_by_org_name">City Lab</Field>
<Field name="collected_by_org_adr_country">USA</Field>
<Field name="collected_by_org_adr_city">Springfield</Field>
<Field name="collected_by_org_adr_postalcode">11111</Field>
<Field name="collected_by_org_adr_region">MA</Field>
<Field name="collected_by_org_adr_street">20 Elm St</Field>
<Field name="collected_by_name_family">Finnialispi</Field>
<Field name="collected_by_name_given">Tad</Field>
<Field name="collected_by_role">Lab Specialist</Field>
</Model>
</Models>
""",
]
TEST_LABS = report_content_to_test_docs(_TEST_LABS)
from base import report_content_to_test_docs
_TEST_EQUIPMENT = [
"""
<Equipment xmlns='http://indivo.org/vocab/xml/documents#'>
<dateStarted>2010-09-01</dateStarted>
<name>Tractor</name>
<vendor>John Deer</vendor>
<description>Hello World</description>
</Equipment>
""", """
<Equipment xmlns="http://indivo.org/vocab/xml/documents#">
<dateStarted>2010-09-02</dateStarted>
<name>cane</name>
</Equipment>
"""
]
TEST_EQUIPMENT = report_content_to_test_docs(_TEST_EQUIPMENT)
from base import report_content_to_test_docs
hba1c = [ {'value' : '3.4', 'datetime' : '2009-01-02T12:03:10Z'},
{'value' : '9.2', 'datetime' : '2008-01-22T17:29:59Z'},
{'value' : '4.8', 'datetime' : '2007-11-02T12:16:38Z'},
{'value' : '4.6', 'datetime' : '2009-04-16T03:22:24Z'},
{'value' : '3.1', 'datetime' : '2009-09-12T12:13:43Z'},
{'value' : '3.3', 'datetime' : '2009-01-03T11:03:23Z'},
{'value' : '1.9', 'datetime' : '2009-08-11T02:38:32Z'},
{'value' : '1.3', 'datetime' : '2009-01-09T12:12:20Z'},
{'value' : '6.7', 'datetime' : '2009-03-12T02:43:39Z'},
{'value' : '3.7', 'datetime' : '2009-02-13T02:11:17Z'}]
_TEST_MEASUREMENTS = [
"""
<HBA1C xmlns='http://indivo.org/vocab/xml/documents#' value='1.77' unit='percent' datetime='2009-07-22T01:00:00.000Z' />
""",
"""
<HBA1C xmlns='http://indivo.org/vocab/xml/documents#' value='2.13' unit='percent' datetime='2009-06-17T03:00:00.034Z' />
""",
"""
<HBA1C xmlns='http://indivo.org/vocab/xml/documents#' value='3.13' unit='percent' datetime='2009-06-17T03:00:00Z' />
""",
]
TEST_MEASUREMENTS = report_content_to_test_docs(_TEST_MEASUREMENTS)
from base import report_content_to_test_docs
_TEST_VITALS = [
"""
<VitalSign xmlns='http://indivo.org/vocab/xml/documents#'>
<dateMeasured>2009-05-16T15:23:21Z</dateMeasured>
<name type='http://codes.indivo.org/vitalsigns/' value='123' abbrev='BPsys'>Blood Pressure Systolic</name>
<value>145</value>
<unit type='http://codes.indivo.org/units/' value='31' abbrev='mmHg'>millimeters of mercury</unit>
<site>left arm</site>
<position>sitting down</position>
</VitalSign>
""",
"""
<VitalSign xmlns='http://indivo.org/vocab/xml/documents#'>
<dateMeasured>2009-05-16T15:23:21Z</dateMeasured>
<name type='http://codes.indivo.org/vitalsigns/' value='123' abbrev='weight'>weight test</name>
<value>185</value>
<unit type='http://codes.indivo.org/units/' value='31' abbrev='lbs'>pounds</unit>
<site />
<position />
</VitalSign>
""",
]
TEST_VITALS = report_content_to_test_docs(_TEST_VITALS)
}, {
'value': '3.3',
'datetime': '2009-01-03T11:03:23Z'
}, {
'value': '1.9',
'datetime': '2009-08-11T02:38:32Z'
}, {
'value': '1.3',
'datetime': '2009-01-09T12:12:20Z'
}, {
'value': '6.7',
'datetime': '2009-03-12T02:43:39Z'
}, {
'value': '3.7',
'datetime': '2009-02-13T02:11:17Z'
}]
_TEST_MEASUREMENTS = [
"""
<HBA1C xmlns='http://indivo.org/vocab/xml/documents#' value='1.77' unit='percent' datetime='2009-07-22T01:00:00.000Z' />
""",
"""
<HBA1C xmlns='http://indivo.org/vocab/xml/documents#' value='2.13' unit='percent' datetime='2009-06-17T03:00:00.034Z' />
""",
"""
<HBA1C xmlns='http://indivo.org/vocab/xml/documents#' value='3.13' unit='percent' datetime='2009-06-17T03:00:00Z' />
""",
]
TEST_MEASUREMENTS = report_content_to_test_docs(_TEST_MEASUREMENTS)
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
Patient presents with a serious condition of X and is probably going to need to see a doctor about Y and Z.
</content>
</SimpleClinicalNote>
""",
]
TEST_CLINICAL_NOTES = report_content_to_test_docs(_TEST_CLINICAL_NOTES)
_TEST_IMMUNIZATIONS = [
"""
<Immunization xmlns='http://indivo.org/vocab/xml/documents#'>
<dateAdministered>2009-05-16T00:00:00Z</dateAdministered>
<administeredBy>Children's Hospital Boston</administeredBy>
<vaccine>
<type type='http://codes.indivo.org/codes/vaccinetypes/' value='hep-B' abbrev='hepb'>Hepatitis B</type>
<manufacturer>Oolong Pharmaceuticals</manufacturer>
<lot>AZ1234567</lot>
<expiration>2009-06-01</expiration>
</vaccine>
<sequence>2</sequence>
<anatomicSurface type='http://codes.indivo.org/codes/anatomicsurfaces/' value='shoulder' abbrev='shoulder'>Shoulder</anatomicSurface>
<adverseEvent>pain and rash</adverseEvent>
</Immunization>
""",
"""
<Immunization xmlns='http://indivo.org/vocab/xml/documents#'>
<dateAdministered>2008-05-12T00:00:00Z</dateAdministered>
<vaccine>
<type type='http://codes.indivo.org/codes/vaccinetypes/' value='82' abbrev='adenovirus, NOS'>adenovirus vaccine, NOS</type>
</vaccine>
<sequence>2</sequence>
</Immunization>
""",
]
TEST_IMMUNIZATIONS = report_content_to_test_docs(_TEST_IMMUNIZATIONS)
<Problem xmlns='http://indivo.org/vocab/xml/documents#'>
<dateOnset>2009-05-16T12:00:00Z</dateOnset>
<dateResolution>2009-05-16T16:00:00Z</dateResolution>
<name type='http://codes.indivo.org/problems/' value='123' abbrev='MI'>Myocardial Infarction</name>
<comments>mild heart attack</comments>
<diagnosedBy>Steve Zabak</diagnosedBy>
</Problem>
""",
"""
<Problem xmlns='http://indivo.org/vocab/xml/documents#'>
<dateOnset>2009-05-16T12:00:00Z</dateOnset>
<dateResolution>2009-05-16T16:00:00Z</dateResolution>
<name>Myocardial Infarction</name>
<comments>mild heart attack</comments>
<diagnosedBy>Steve Zabak</diagnosedBy>
</Problem>
""",
"""
<Problem xmlns='http://indivo.org/vocab/xml/documents#'>
<name>Myocardial Infarction</name>
<comments>mild heart attack</comments>
<diagnosedBy>Steve Zabak</diagnosedBy>
</Problem>
""",
]
TEST_PROBLEMS = report_content_to_test_docs(_TEST_PROBLEMS)
from base import report_content_to_test_docs
_TEST_PROCEDURES = [
"""
<Procedure xmlns='http://indivo.org/vocab/xml/documents#'>
<datePerformed>2009-05-16T12:00:00Z</datePerformed>
<name type='http://codes.indivo.org/procedures#' value='85' abbrev='append'>Appendectomy</name>
<provider>
<name>Kenneth Mandl</name>
<institution>Children's Hospital Boston</institution>
</provider>
</Procedure>
""",
"""
<Procedure xmlns='http://indivo.org/vocab/xml/documents#'>
<datePerformed>2009-06-16T12:00:00Z</datePerformed>
<name>Appendectomy</name>
<provider>
<name>Kenneth Mandl</name>
<institution>Children's Hospital Boston</institution>
</provider>
</Procedure>
""",
]
TEST_PROCEDURES = report_content_to_test_docs(_TEST_PROCEDURES)
<frequency>every 12 hours</frequency>
<prescription>
<by>
<name>Dr. Ken Mandl</name>
<institution>Children's Hospital Boston</institution>
</by>
<on>2009-02-01</on>
<stopOn>2010-01-31</stopOn>
<dispenseAsWritten>true</dispenseAsWritten>
<duration>P2M</duration>
<refillInfo>once a month for 3 months</refillInfo>
<instructions>don't take them all at once!</instructions>
</prescription>
</Medication>
""",
"""
<Medication xmlns='http://indivo.org/vocab/xml/documents#'>
<dateStarted>2009-02-05</dateStarted>
<name type='http://indivo.org/codes/meds#' value='Tylenol' abbrev='Tylenol'>Tylenol</name>
<dose>
<textValue>2</textValue>
</dose>
<frequency type='http://indivo.org/codes/frequency#' value='225756002' abbrev='q4'>every 4 hours</frequency>
</Medication>
""",
]
TEST_MEDICATIONS = report_content_to_test_docs(_TEST_MEDICATIONS)
