def write(self, file_name) :
"""Write stored data to file.
Take all the data stored in the Writer (from added DataBlocks) and
write it to a fits file with the passed file name.
"""
# Add the data
Col = pyfits.Column(name='DATA', format=self.data_format,
array=self.data)
columns = [Col,]
# Add all the other stored fields.
for field_name in self.field.iterkeys() :
Col = pyfits.Column(name=field_name,
format=self.formats[field_name],
array=self.field[field_name])
columns.append(Col)
coldefs = pyfits.ColDefs(columns)
# Creat fits header data units, one for the table and the mandatory
# primary.
tbhdu = pyfits.new_table(coldefs)
prihdu = pyfits.PrimaryHDU()
# Add the write history.
fname_abbr = ku.abbreviate_file_path(file_name)
self.history.add('Written to file.', ('File name: ' + fname_abbr,))
# Add the history to the header.
bf.write_history_header(prihdu.header, self.history)
# Combine the HDUs and write to file.
hdulist = pyfits.HDUList([prihdu, tbhdu])
hdulist.writeto(file_name, clobber=True)
if self.feedback > 0 :
print 'Wrote data to file: ' + fname_abbr
def write(self, file_name) :
"""Write stored data to file.
Take all the data stored in the Writer (from added DataBlocks) and
write it to a fits file with the passed file name.
"""
# Add the data
Col = pyfits.Column(name='DATA', format=self.data_format,
array=self.data)
columns = [Col,]
# Add all the other stored fields.
for field_name in self.field.iterkeys() :
Col = pyfits.Column(name=field_name,
format=self.formats[field_name],
array=self.field[field_name])
columns.append(Col)
coldefs = pyfits.ColDefs(columns)
# Creat fits header data units, one for the table and the mandatory
# primary.
tbhdu = pyfits.new_table(coldefs)
prihdu = pyfits.PrimaryHDU()
# Add the write history.
fname_abbr = ku.abbreviate_file_path(file_name)
self.history.add('Written to file.', ('File name: ' + fname_abbr,))
# Add the history to the header.
bf.write_history_header(prihdu.header, self.history)
# Combine the HDUs and write to file.
hdulist = pyfits.HDUList([prihdu, tbhdu])
hdulist.writeto(file_name, clobber=True)
if self.feedback > 0 :
print 'Wrote data to file: ' + fname_abbr
def write(Maps, file_name, feedback=2):
"""Write a map to fits file.
Map should be a map_data.MapData object.
"""
# If only a single Map was passed, make it iterable.
if not hasattr(Maps, '__iter__'):
Maps = (Maps, )
# First create a primary with the history and such:
prihdu = pyfits.PrimaryHDU()
# Add history to the primary.
fname_abbr = ku.abbreviate_file_path(file_name)
# Add final history entry and store in the primary header.
history = base_data.merge_histories(*Maps)
history.add('Written to file.', 'File name: ' + fname_abbr)
bf.write_history_header(prihdu.header, history)
list_of_hdus = [prihdu]
for ii, Map in enumerate(Maps):
# Creat an image HDU.
map = sp.array(ma.filled(Map.data, float('nan')))
imhdu = pyfits.ImageHDU(sp.swapaxes(map, 0, 2), name='MAP%d' % ii)
# Add extra data to the HDU
for key in Map.field.iterkeys():
if Map.field_axes[key] != ():
raise ce.DataError('Only 0D data can be written to a Fits Map '
'Header.')
card = pyfits.Card(key, Map.field[key].item())
imhdu.header.ascardlist().append(card)
list_of_hdus.append(imhdu)
# Creat the HDU list and write to file.
hdulist = pyfits.HDUList(list_of_hdus)
hdulist.writeto(file_name, clobber=True)
if feedback > 0:
print 'Wrote data to file: ' + fname_abbr
def write(Maps, file_name, feedback=2):
"""Write a map to fits file.
Map should be a map_data.MapData object.
"""
# If only a single Map was passed, make it iterable.
if not hasattr(Maps, "__iter__"):
Maps = (Maps,)
# First create a primary with the history and such:
prihdu = pyfits.PrimaryHDU()
# Add history to the primary.
fname_abbr = ku.abbreviate_file_path(file_name)
# Add final history entry and store in the primary header.
history = base_data.merge_histories(*Maps)
history.add("Written to file.", "File name: " + fname_abbr)
bf.write_history_header(prihdu.header, history)
list_of_hdus = [prihdu]
for ii, Map in enumerate(Maps):
# Creat an image HDU.
map = sp.array(ma.filled(Map.data, float("nan")))
imhdu = pyfits.ImageHDU(sp.swapaxes(map, 0, 2), name="MAP%d" % ii)
# Add extra data to the HDU
for key in Map.field.iterkeys():
if Map.field_axes[key] != ():
raise ce.DataError("Only 0D data can be written to a Fits Map " "Header.")
card = pyfits.Card(key, Map.field[key].item())
imhdu.header.ascardlist().append(card)
list_of_hdus.append(imhdu)
# Creat the HDU list and write to file.
hdulist = pyfits.HDUList(list_of_hdus)
hdulist.writeto(file_name, clobber=True)
if feedback > 0:
print "Wrote data to file: " + fname_abbr