コード例 #1
0
 def test_programs(self):
     """Identify programs and versions used in analysis.
     """
     with make_workdir() as workdir:
         config = load_config(
             get_post_process_yaml(self.automated_dir, workdir))
         print programs._get_versions(config)
コード例 #2
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 def test_programs(self, data_dir):
     """Identify programs and versions used in analysis.
     """
     from bcbio.provenance import programs
     with make_workdir() as workdir:
         config = load_config(get_post_process_yaml(data_dir, workdir))
         print programs._get_versions(config)
コード例 #3
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 def test_programs(self, data_dir):
     """Identify programs and versions used in analysis.
     """
     from bcbio.provenance import programs
     with make_workdir() as workdir:
         config = load_config(get_post_process_yaml(data_dir, workdir))
         print programs._get_versions(config)
コード例 #4
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 def test_programs(self):
     """Identify programs and versions used in analysis.
     """
     config = load_config(
         os.path.join(self.data_dir, "automated",
                      "post_process-sample.yaml"))
     print programs._get_versions(config)
コード例 #5
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 def test_programs(self):
     """Identify programs and versions used in analysis.
     """
     with make_workdir() as workdir:
         config = load_config(get_post_process_yaml(self.data_dir, workdir))
         print programs._get_versions(config)
コード例 #6
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ファイル: test_pipeline.py プロジェクト: idot/bcbio-nextgen 
 def test_programs(self):
     """Identify programs and versions used in analysis.
     """
     config = load_config(os.path.join(self.data_dir, "automated",
                                       "post_process-sample.yaml"))
     print programs._get_versions(config)
コード例 #7
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 def test_programs(self, global_config):
     """Identify programs and versions used in analysis.
     """
     from bcbio.provenance import programs
     print(programs._get_versions(load_config(global_config)))