Python get_analysis_intervalsの例

コード例 #1

ファイル: ensemble.py プロジェクト: GetBen/bcbio-nextgen

def _write_config_file(batch_id, caller_names, base_dir, data):
    """Write YAML configuration to generate an ensemble set of combined calls.
    """
    config_dir = utils.safe_makedir(os.path.join(base_dir, "config"))
    config_file = os.path.join(config_dir, "{0}-ensemble.yaml".format(batch_id))
    algorithm = data["config"]["algorithm"]
    econfig = {"ensemble": algorithm["ensemble"],
               "names": caller_names,
               "prep-inputs": False}
    intervals = validate.get_analysis_intervals(data)
    if intervals:
        econfig["intervals"] = os.path.abspath(intervals)
    with open(config_file, "w") as out_handle:
        yaml.safe_dump(econfig, out_handle, allow_unicode=False, default_flow_style=False)
    return config_file

コード例 #2

def _write_config_file(batch_id, caller_names, base_dir, data):
    """Write YAML configuration to generate an ensemble set of combined calls.
    """
    config_dir = utils.safe_makedir(os.path.join(base_dir, "config"))
    config_file = os.path.join(config_dir, "{0}-ensemble.yaml".format(batch_id))
    algorithm = data["config"]["algorithm"]
    econfig = {"ensemble": algorithm["ensemble"],
               "names": caller_names,
               "prep-inputs": False}
    intervals = validate.get_analysis_intervals(data)
    if intervals:
        econfig["intervals"] = os.path.abspath(intervals)
    with open(config_file, "w") as out_handle:
        yaml.safe_dump(econfig, out_handle, allow_unicode=False, default_flow_style=False)
    return config_file