full_matrix = np.concatenate(
[np.abs(corr_cls_coef), np.abs(corr_pln_coef)], axis=0)
threshold = np.median(full_matrix[np.nonzero(full_matrix)]) + \
np.std(full_matrix[np.nonzero(full_matrix)])
data_cls_bin = np.abs(corr_cls_coef) > threshold
data_pln_bin = np.abs(corr_pln_coef) > threshold
deg_cls_tmp = np.asarray(
[bct.degrees_und(g) for g in data_cls_bin])
deg_pln_tmp = np.asarray(
[bct.degrees_und(g) for g in data_pln_bin])
trans_cls_tmp = np.asarray(
[bct.transitivity_bu(g) for g in data_cls_bin])
trans_pln_tmp = np.asarray(
[bct.transitivity_bu(g) for g in data_pln_bin])
cp_cls_tmp = np.asarray(
[bct.distance.charpath(g)[0] for g in data_cls_bin])
cp_pln_tmp = np.asarray(
[bct.distance.charpath(g)[0] for g in data_pln_bin])
# Add measure to results list
deg_cls.append(deg_cls_tmp)
deg_pln.append(deg_pln_tmp)
trans_cls.append(trans_cls_tmp)
trans_pln.append(trans_pln_tmp)
cp_cls.append(cp_cls_tmp)
cp_pln.append(cp_pln_tmp)
def test_transitivity_bu():
x = bct.binarize(load_sample(thres=.17), copy=False)
t = bct.transitivity_bu(x)
assert np.allclose(t, 0.42763107)
def test_transitivity_bu(): x = bct.binarize(load_sample(thres=.17), copy=False) t = bct.transitivity_bu(x) assert np.allclose(t, 0.42763107)
[np.abs(corr_cls_coef),
np.abs(corr_pln_coef)], axis=0)
threshold = np.median(full_matrix[np.nonzero(full_matrix)]) + \
np.std(full_matrix[np.nonzero(full_matrix)])
data_cls_bin = np.abs(corr_cls_coef) > threshold
data_pln_bin = np.abs(corr_pln_coef) > threshold
deg_cls_tmp = np.asarray(
[bct.degrees_und(g) for g in data_cls_bin])
deg_pln_tmp = np.asarray(
[bct.degrees_und(g) for g in data_pln_bin])
trans_cls_tmp = np.asarray(
[bct.transitivity_bu(g) for g in data_cls_bin])
trans_pln_tmp = np.asarray(
[bct.transitivity_bu(g) for g in data_pln_bin])
cp_cls_tmp = np.asarray(
[bct.distance.charpath(g)[0] for g in data_cls_bin])
cp_pln_tmp = np.asarray(
[bct.distance.charpath(g)[0] for g in data_pln_bin])
# Add measure to results list
deg_cls.append(deg_cls_tmp)
deg_pln.append(deg_pln_tmp)
trans_cls.append(trans_cls_tmp)
trans_pln.append(trans_pln_tmp)
cp_cls.append(cp_cls_tmp)
cp_pln.append(cp_pln_tmp)