def test_request_callback_two_operators(self, mock_get_request_samples,
mock_create_jobs_from_request):
# mock_get_request_samples.return_value = {'recipe': 'TestAssay'}
file_conflict = File.objects.create(
path=
"/path/to/sample/08/sampleName_002-d_IGO_igoId_002_S134_L008_R2_001.fastq.gz",
file_type=self.fastq,
file_group=self.file_group,
)
file_metadata = FileMetadata.objects.create(file=file_conflict,
version=1,
metadata={
'requestId':
'test1',
'recipe':
'TestAssay',
'labHeadEmail':
'*****@*****.**'
})
operator1 = Operator.objects.create(slug="Operator1",
class_name="Operator",
recipes=['TestAssay'],
active=True)
operator2 = Operator.objects.create(slug="Operator2",
class_name="Operator",
recipes=['TestAssay'],
active=True)
request_callback('test1')
calls = [
call('test1', operator1.id, None),
call('test1', operator2.id, None)
]
mock_create_jobs_from_request.assert_has_calls(calls, any_order=True)
def test_request_callback(self, mock_get_request_samples,
mock_create_jobs_from_request):
# mock_get_request_samples.return_value = {'recipe': 'TestAssay'}
file_conflict = File.objects.create(
path=
"/path/to/sample/08/sampleName_002-d_IGO_igoId_002_S134_L008_R2_001.fastq.gz",
file_type=self.fastq,
file_group=self.file_group,
)
file_metadata = FileMetadata.objects.create(
file=file_conflict,
version=1,
metadata={
"requestId": "test1",
"recipe": "TestAssay",
"labHeadEmail": "*****@*****.**"
},
)
operator1 = Operator.objects.create(slug="Operator1",
class_name="Operator",
recipes=["TestAssay"],
active=True)
request_callback("test1")
mock_create_jobs_from_request.assert_called_once_with(
"test1", operator1.id, None)
def test_request_callback_unknown_assay(self, mock_get_request_samples,
mock_send_notification):
# mock_get_request_samples.return_value = {'recipe': 'UnknownAssay'}
job_group = JobGroup.objects.create()
notifier = Notifier.objects.create(default=False,
notifier_type="JIRA",
board="IMPORT")
job_group_notifier = JobGroupNotifier.objects.create(
job_group=job_group, notifier_type=notifier)
file_conflict = File.objects.create(
path=
"/path/to/sample/08/sampleName_002-d_IGO_igoId_002_S134_L008_R2_001.fastq.gz",
file_type=self.fastq,
file_group=self.file_group,
)
file_metadata = FileMetadata.objects.create(file=file_conflict,
version=1,
metadata={
'requestId':
'test1',
'recipe':
'UnknownAssay',
'labHeadEmail':
'*****@*****.**'
})
request_callback('test1', str(job_group.id),
str(job_group_notifier.id))
calls = [
call({
'class': 'SetCIReviewEvent',
'job_notifier': str(job_group_notifier.id)
}),
call({
'class': 'SetLabelEvent',
'job_notifier': str(job_group_notifier.id),
'label': 'unrecognized_assay'
}),
call({
'class': 'UnknownAssayEvent',
'job_notifier': str(job_group_notifier.id),
'assay': 'UnknownAssay'
})
]
mock_send_notification.assert_has_calls(calls, any_order=True)
def test_request_callback(self, mock_create_jobs_from_request):
file_conflict = File.objects.create(
path=
"/path/to/sample/08/sampleName_002-d_IGO_igoId_002_S134_L008_R2_001.fastq.gz",
file_type=self.fastq,
file_group=self.file_group,
)
file_metadata = FileMetadata.objects.create(file=file_conflict,
version=1,
metadata={
'requestId': 'test1',
'recipe': 'TestAssay'
})
operator1 = Operator.objects.create(slug="Operator1",
class_name="Operator",
recipes=['TestAssay'],
active=True)
request_callback('test1')
mock_create_jobs_from_request.assert_called_once_with(
'test1', operator1.id, None)
def test_request_callback_disabled_assay(self, mock_get_request_samples,
mock_send_notification):
# mock_get_request_samples.return_value = {'recipe': "DisabledAssay1"}
job_group = JobGroup.objects.create()
notifier = Notifier.objects.create(default=False,
notifier_type="JIRA",
board="IMPORT")
job_group_notifier = JobGroupNotifier.objects.create(
job_group=job_group, notifier_type=notifier)
file_conflict = File.objects.create(
path=
"/path/to/sample/08/sampleName_002-d_IGO_igoId_002_S134_L008_R2_001.fastq.gz",
file_type=self.fastq,
file_group=self.file_group,
)
file_metadata = FileMetadata.objects.create(
file=file_conflict,
version=1,
metadata={
"requestId": "test1",
"recipe": "DisabledAssay1",
"labHeadEmail": "*****@*****.**"
},
)
request_callback("test1", str(job_group.id),
str(job_group_notifier.id))
calls = [
call({
"class": "NotForCIReviewEvent",
"job_notifier": str(job_group_notifier.id)
}),
call({
"class": "DisabledAssayEvent",
"job_notifier": str(job_group_notifier.id),
"assay": "DisabledAssay1"
}),
]
mock_send_notification.assert_has_calls(calls, any_order=True)
def test_request_callback_disabled_assay(self, mock_send_notification):
job_group = JobGroup.objects.create()
notifier = Notifier.objects.create(default=False,
notifier_type="JIRA",
board="IMPORT")
job_group_notifier = JobGroupNotifier.objects.create(
job_group=job_group, notifier_type=notifier)
file_conflict = File.objects.create(
path=
"/path/to/sample/08/sampleName_002-d_IGO_igoId_002_S134_L008_R2_001.fastq.gz",
file_type=self.fastq,
file_group=self.file_group,
)
file_metadata = FileMetadata.objects.create(file=file_conflict,
version=1,
metadata={
'requestId': 'test1',
'recipe':
'DisabledAssay1'
})
request_callback('test1', str(job_group.id),
str(job_group_notifier.id))
calls = [
call({
'class': 'NotForCIReviewEvent',
'job_notifier': str(job_group_notifier.id)
}),
call({
'class': 'DisabledAssayEvent',
'job_notifier': str(job_group_notifier.id),
'assay': 'DisabledAssay1'
})
]
mock_send_notification.assert_has_calls(calls, any_order=True)