def real_vs_sampled_wrapper(output_type,
hparams,
save_file,
sess_idx,
dtype='test',
conditional=True,
max_frames=400,
frame_rate=20,
n_buffer=5,
xtick_locs=None,
frame_rate_beh=None,
format='png'):
"""Produce movie with (AE) reconstructed video and sampled video.
This is a high-level function that loads the model described in the hparams dictionary and
produces the necessary state sequences/samples. The sampled video can be completely
unconditional (states and latents are sampled) or conditioned on the most likely state
sequence.
Parameters
----------
output_type : :obj:`str`
'plot' | 'movie' | 'both'
hparams : :obj:`dict`
needs to contain enough information to specify an autoencoder
save_file : :obj:`str`
full save file (path and filename)
sess_idx : :obj:`int`, optional
session index into data generator
dtype : :obj:`str`, optional
types of trials to make plot/video with; 'train' | 'val' | 'test'
conditional : :obj:`bool`
conditional vs unconditional samples; for creating reconstruction title
max_frames : :obj:`int`, optional
maximum number of frames to animate
frame_rate : :obj:`float`, optional
frame rate of saved movie
n_buffer : :obj:`int`
number of blank frames between animated trials if more one are needed to reach
:obj:`max_frames`
xtick_locs : :obj:`array-like`, optional
tick locations in bin values for plot
frame_rate_beh : :obj:`float`, optional
behavioral video framerate; to properly relabel xticks
format : :obj:`str`, optional
any accepted matplotlib save format, e.g. 'png' | 'pdf' | 'jpeg'
Returns
-------
:obj:`matplotlib.figure.Figure`
matplotlib figure handle if :obj:`output_type='plot'` or :obj:`output_type='both'`, else
nothing returned (movie is saved)
"""
from behavenet.data.utils import get_transforms_paths
from behavenet.fitting.utils import get_expt_dir
from behavenet.fitting.utils import get_session_dir
# check input - cannot create sampled movies for arhmm-labels models (no mapping from labels to
# frames)
if hparams['model_class'].find('labels') > -1:
if output_type == 'both' or output_type == 'movie':
print(
'warning: cannot create video with "arhmm-labels" model; producing plots'
)
output_type = 'plot'
# load latents and states (observed and sampled)
model_output = get_model_latents_states(hparams,
'',
sess_idx=sess_idx,
return_samples=50,
cond_sampling=conditional)
if output_type == 'both' or output_type == 'movie':
# load in AE decoder
if hparams.get('ae_model_path', None) is not None:
ae_model_file = os.path.join(hparams['ae_model_path'],
'best_val_model.pt')
ae_arch = pickle.load(
open(os.path.join(hparams['ae_model_path'], 'meta_tags.pkl'),
'rb'))
else:
hparams['session_dir'], sess_ids = get_session_dir(hparams)
hparams['expt_dir'] = get_expt_dir(hparams)
_, latents_file = get_transforms_paths('ae_latents', hparams,
sess_ids[sess_idx])
ae_model_file = os.path.join(os.path.dirname(latents_file),
'best_val_model.pt')
ae_arch = pickle.load(
open(
os.path.join(os.path.dirname(latents_file),
'meta_tags.pkl'), 'rb'))
print('loading model from %s' % ae_model_file)
ae_model = AE(ae_arch)
ae_model.load_state_dict(
torch.load(ae_model_file,
map_location=lambda storage, loc: storage))
ae_model.eval()
n_channels = ae_model.hparams['n_input_channels']
y_pix = ae_model.hparams['y_pixels']
x_pix = ae_model.hparams['x_pixels']
# push observed latents through ae decoder
ims_recon = np.zeros((0, n_channels * y_pix, x_pix))
i_trial = 0
while ims_recon.shape[0] < max_frames:
recon = ae_model.decoding(
torch.tensor(model_output['latents'][dtype][i_trial]).float(), None, None). \
cpu().detach().numpy()
recon = np.concatenate(
[recon[:, i] for i in range(recon.shape[1])], axis=1)
zero_frames = np.zeros((n_buffer, n_channels * y_pix,
x_pix)) # add a few black frames
ims_recon = np.concatenate((ims_recon, recon, zero_frames), axis=0)
i_trial += 1
# push sampled latents through ae decoder
ims_recon_samp = np.zeros((0, n_channels * y_pix, x_pix))
i_trial = 0
while ims_recon_samp.shape[0] < max_frames:
recon = ae_model.decoding(
torch.tensor(model_output['latents_gen'][i_trial]).float(),
None, None).cpu().detach().numpy()
recon = np.concatenate(
[recon[:, i] for i in range(recon.shape[1])], axis=1)
zero_frames = np.zeros((n_buffer, n_channels * y_pix,
x_pix)) # add a few black frames
ims_recon_samp = np.concatenate(
(ims_recon_samp, recon, zero_frames), axis=0)
i_trial += 1
make_real_vs_sampled_movies(ims_recon,
ims_recon_samp,
conditional=conditional,
save_file=save_file,
frame_rate=frame_rate)
if output_type == 'both' or output_type == 'plot':
i_trial = 0
latents = model_output['latents'][dtype][i_trial][:max_frames]
states = model_output['states'][dtype][i_trial][:max_frames]
latents_samp = model_output['latents_gen'][i_trial][:max_frames]
if not conditional:
states_samp = model_output['states_gen'][i_trial][:max_frames]
else:
states_samp = []
fig = plot_real_vs_sampled(latents,
latents_samp,
states,
states_samp,
save_file=save_file,
xtick_locs=xtick_locs,
frame_rate=frame_rate_beh,
format=format)
if output_type == 'movie':
return None
elif output_type == 'both' or output_type == 'plot':
return fig
else:
raise ValueError('"%s" is an invalid output_type' % output_type)
def make_syllable_movies_wrapper(hparams,
save_file,
sess_idx=0,
dtype='test',
max_frames=400,
frame_rate=10,
min_threshold=0,
n_buffer=5,
n_pre_frames=3,
n_rows=None,
single_syllable=None):
"""Present video clips of each individual syllable in separate panels.
This is a high-level function that loads the arhmm model described in the hparams dictionary
and produces the necessary states/video frames.
Parameters
----------
hparams : :obj:`dict`
needs to contain enough information to specify an arhmm
save_file : :obj:`str`
full save file (path and filename)
sess_idx : :obj:`int`, optional
session index into data generator
dtype : :obj:`str`, optional
types of trials to make video with; 'train' | 'val' | 'test'
max_frames : :obj:`int`, optional
maximum number of frames to animate
frame_rate : :obj:`float`, optional
frame rate of saved movie
min_threshold : :obj:`int`, optional
minimum number of frames in a syllable run to be considered for movie
n_buffer : :obj:`int`
number of blank frames between syllable instances
n_pre_frames : :obj:`int`
number of behavioral frames to precede each syllable instance
n_rows : :obj:`int` or :obj:`NoneType`
number of rows in output movie
single_syllable : :obj:`int` or :obj:`NoneType`
choose only a single state for movie
"""
from behavenet.data.data_generator import ConcatSessionsGenerator
from behavenet.data.utils import get_data_generator_inputs
from behavenet.data.utils import get_transforms_paths
from behavenet.fitting.utils import experiment_exists
from behavenet.fitting.utils import get_expt_dir
from behavenet.fitting.utils import get_session_dir
# load images, latents, and states
hparams['session_dir'], sess_ids = get_session_dir(hparams)
hparams['expt_dir'] = get_expt_dir(hparams)
hparams['load_videos'] = True
hparams, signals, transforms, paths = get_data_generator_inputs(
hparams, sess_ids)
data_generator = ConcatSessionsGenerator(
hparams['data_dir'],
sess_ids,
signals_list=[signals[sess_idx]],
transforms_list=[transforms[sess_idx]],
paths_list=[paths[sess_idx]],
device='cpu',
as_numpy=True,
batch_load=False,
rng_seed=hparams['rng_seed_data'])
ims_orig = data_generator.datasets[sess_idx].data['images']
del data_generator # free up memory
# get tt version number
_, version = experiment_exists(hparams, which_version=True)
print('producing syllable videos for arhmm %s' % version)
# load latents/labels
if hparams['model_class'].find('labels') > -1:
from behavenet.data.utils import load_labels_like_latents
latents = load_labels_like_latents(hparams, sess_ids, sess_idx)
else:
_, latents_file = get_transforms_paths('ae_latents', hparams,
sess_ids[sess_idx])
with open(latents_file, 'rb') as f:
latents = pickle.load(f)
trial_idxs = latents['trials'][dtype]
# load model
model_file = os.path.join(hparams['expt_dir'], 'version_%i' % version,
'best_val_model.pt')
with open(model_file, 'rb') as f:
hmm = pickle.load(f)
# infer discrete states
states = [
hmm.most_likely_states(latents['latents'][s])
for s in latents['trials'][dtype]
]
if len(states) == 0:
raise ValueError('No latents for dtype=%s' % dtype)
# find runs of discrete states; state indices is a list, each entry of which is a np array with
# shape (n_state_instances, 3), where the 3 values are:
# chunk_idx, chunk_start_idx, chunk_end_idx
# chunk_idx is in [0, n_chunks], and indexes trial_idxs
state_indices = get_discrete_chunks(states, include_edges=True)
K = len(state_indices)
# get all example over minimum state length threshold
over_threshold_instances = [[] for _ in range(K)]
for i_state in range(K):
if state_indices[i_state].shape[0] > 0:
state_lens = np.diff(state_indices[i_state][:, 1:3], axis=1)
over_idxs = state_lens > min_threshold
over_threshold_instances[i_state] = state_indices[i_state][
over_idxs[:, 0]]
np.random.shuffle(
over_threshold_instances[i_state]) # shuffle instances
make_syllable_movies(ims_orig=ims_orig,
state_list=over_threshold_instances,
trial_idxs=trial_idxs,
save_file=save_file,
max_frames=max_frames,
frame_rate=frame_rate,
n_buffer=n_buffer,
n_pre_frames=n_pre_frames,
n_rows=n_rows,
single_syllable=single_syllable)
def get_model_latents_states(hparams,
version,
sess_idx=0,
return_samples=0,
cond_sampling=False,
dtype='test',
dtypes=['train', 'val', 'test'],
rng_seed=0):
"""Return arhmm defined in :obj:`hparams` with associated latents and states.
Can also return sampled latents and states.
Parameters
----------
hparams : :obj:`dict`
needs to contain enough information to specify an arhmm
version : :obj:`str` or :obj:`int`
test tube model version (can be 'best')
sess_idx : :obj:`int`, optional
session index into data generator
return_samples : :obj:`int`, optional
number of trials to sample from model
cond_sampling : :obj:`bool`, optional
if :obj:`True` return samples conditioned on most likely state sequence; else return
unconditioned samples
dtype : :obj:`str`, optional
trial type to use for conditonal sampling; 'train' | 'val' | 'test'
dtypes : :obj:`array-like`, optional
trial types for which to collect latents and states
rng_seed : :obj:`int`, optional
random number generator seed to control sampling
Returns
-------
:obj:`dict`
- 'model' (:obj:`ssm.HMM` object)
- 'latents' (:obj:`dict`): latents from train, val and test trials
- 'states' (:obj:`dict`): states from train, val and test trials
- 'trial_idxs' (:obj:`dict`): trial indices from train, val and test trials
- 'latents_gen' (:obj:`list`)
- 'states_gen' (:obj:`list`)
"""
from behavenet.data.utils import get_transforms_paths
from behavenet.fitting.utils import experiment_exists
from behavenet.fitting.utils import get_best_model_version
from behavenet.fitting.utils import get_expt_dir
from behavenet.fitting.utils import get_session_dir
hparams['session_dir'], sess_ids = get_session_dir(hparams)
hparams['expt_dir'] = get_expt_dir(hparams)
# get version/model
if version == 'best':
version = get_best_model_version(hparams['expt_dir'],
measure='val_loss',
best_def='max')[0]
else:
_, version = experiment_exists(hparams, which_version=True)
if version is None:
raise FileNotFoundError(
'Could not find the specified model version in %s' %
hparams['expt_dir'])
# load model
model_file = os.path.join(hparams['expt_dir'], 'version_%i' % version,
'best_val_model.pt')
with open(model_file, 'rb') as f:
hmm = pickle.load(f)
# load latents/labels
if hparams['model_class'].find('labels') > -1:
from behavenet.data.utils import load_labels_like_latents
all_latents = load_labels_like_latents(hparams, sess_ids, sess_idx)
else:
_, latents_file = get_transforms_paths('ae_latents', hparams,
sess_ids[sess_idx])
with open(latents_file, 'rb') as f:
all_latents = pickle.load(f)
# collect inferred latents/states
trial_idxs = {}
latents = {}
states = {}
for data_type in dtypes:
trial_idxs[data_type] = all_latents['trials'][data_type]
latents[data_type] = [
all_latents['latents'][i_trial]
for i_trial in trial_idxs[data_type]
]
states[data_type] = [
hmm.most_likely_states(x) for x in latents[data_type]
]
# collect sampled latents/states
if return_samples > 0:
states_gen = []
np.random.seed(rng_seed)
if cond_sampling:
n_latents = latents[dtype][0].shape[1]
latents_gen = [
np.zeros((len(state_seg), n_latents))
for state_seg in states[dtype]
]
for i_seg, state_seg in enumerate(states[dtype]):
for i_t in range(len(state_seg)):
if i_t >= 1:
latents_gen[i_seg][i_t] = hmm.observations.sample_x(
states[dtype][i_seg][i_t],
latents_gen[i_seg][:i_t],
input=np.zeros(0))
else:
latents_gen[i_seg][i_t] = hmm.observations.sample_x(
states[dtype][i_seg][i_t],
latents[dtype][i_seg][0].reshape((1, n_latents)),
input=np.zeros(0))
else:
latents_gen = []
offset = 200
for i in range(return_samples):
these_states_gen, these_latents_gen = hmm.sample(
latents[dtype][0].shape[0] + offset)
latents_gen.append(these_latents_gen[offset:])
states_gen.append(these_states_gen[offset:])
else:
latents_gen = []
states_gen = []
return_dict = {
'model': hmm,
'latents': latents,
'states': states,
'trial_idxs': trial_idxs,
'latents_gen': latents_gen,
'states_gen': states_gen,
}
return return_dict
def get_r2s_by_trial(hparams, model_types):
"""For a given session, load R^2 metrics from all decoders defined by hparams.
Parameters
----------
hparams : :obj:`dict`
needs to contain enough information to specify decoders
model_types : :obj:`list` of :obj:`strs`
'mlp' | 'mlp-mv' | 'lstm'
Returns
-------
:obj:`pd.DataFrame`
pandas dataframe of decoder validation metrics
"""
dataset = _get_dataset_str(hparams)
region_names = get_region_list(hparams)
metrics = []
model_idx = 0
model_counter = 0
for region in region_names:
hparams['region'] = region
for model_type in model_types:
hparams['session_dir'], _ = get_session_dir(
hparams, session_source=hparams.get('all_source', 'save'))
expt_dir = get_expt_dir(hparams,
model_type=model_type,
model_class=hparams['model_class'],
expt_name=hparams['experiment_name'])
# gather all versions
try:
versions = get_subdirs(expt_dir)
except Exception:
print('No models in %s; skipping' % expt_dir)
# load csv files with model metrics (saved out from test tube)
for i, version in enumerate(versions):
# read metrics csv file
model_dir = os.path.join(expt_dir, version)
try:
metric = pd.read_csv(os.path.join(model_dir,
'metrics.csv'))
model_counter += 1
except FileNotFoundError:
continue
with open(os.path.join(model_dir, 'meta_tags.pkl'), 'rb') as f:
hparams = pickle.load(f)
# append model info to metrics ()
version_num = version[8:]
metric['version'] = str('version_%i' % model_idx + version_num)
metric['region'] = region
metric['dataset'] = dataset
metric['model_type'] = model_type
for key, val in hparams.items():
if isinstance(val, (str, int, float)):
metric[key] = val
metrics.append(metric)
model_idx += 10000 # assumes no more than 10k model versions/expt
# put everything in pandas dataframe
metrics_df = pd.concat(metrics, sort=False)
return metrics_df
def load_metrics_csv_as_df(hparams,
lab,
expt,
metrics_list,
test=False,
version='best'):
"""Load metrics csv file and return as a pandas dataframe for easy plotting.
Parameters
----------
hparams : :obj:`dict`
requires `sessions_csv`, `multisession`, `lab`, `expt`, `animal` and `session`
lab : :obj:`str`
for `get_lab_example`
expt : :obj:`str`
for `get_lab_example`
metrics_list : :obj:`list`
names of metrics to pull from csv; do not prepend with 'tr', 'val', or 'test'
test : :obj:`bool`
True to only return test values (computed once at end of training)
version: :obj:`str`
`best` to find best model in tt expt, None to find model with hyperparams defined in
`hparams`, int to load specific model
Returns
-------
:obj:`pandas.DataFrame` object
"""
# programmatically fill out other hparams options
get_lab_example(hparams, lab, expt)
hparams['session_dir'], sess_ids = get_session_dir(hparams)
hparams['expt_dir'] = get_expt_dir(hparams)
# find metrics csv file
if version is 'best':
version = get_best_model_version(hparams['expt_dir'])[0]
elif isinstance(version, int):
version = version
else:
_, version = experiment_exists(hparams, which_version=True)
version_dir = os.path.join(hparams['expt_dir'], 'version_%i' % version)
metric_file = os.path.join(version_dir, 'metrics.csv')
metrics = pd.read_csv(metric_file)
# collect data from csv file
sess_ids = read_session_info_from_csv(
os.path.join(version_dir, 'session_info.csv'))
sess_ids_strs = []
for sess_id in sess_ids:
sess_ids_strs.append(
str('%s/%s' % (sess_id['animal'], sess_id['session'])))
metrics_df = []
for i, row in metrics.iterrows():
dataset = 'all' if row['dataset'] == -1 else sess_ids_strs[
row['dataset']]
if test:
test_dict = {
'dataset': dataset,
'epoch': row['epoch'],
'dtype': 'test'
}
for metric in metrics_list:
metrics_df.append(
pd.DataFrame(
{
**test_dict, 'loss': metric,
'val': row['test_%s' % metric]
},
index=[0]))
else:
# make dict for val data
val_dict = {
'dataset': dataset,
'epoch': row['epoch'],
'dtype': 'val'
}
for metric in metrics_list:
metrics_df.append(
pd.DataFrame(
{
**val_dict, 'loss': metric,
'val': row['val_%s' % metric]
},
index=[0]))
# NOTE: grayed out lines are old version that returns a single dataframe row containing
# all losses per epoch; new way creates one row per loss, making it easy to use with
# seaborn's FacetGrid object for multi-axis plotting for metric in metrics_list:
# val_dict[metric] = row['val_%s' % metric]
# metrics_df.append(pd.DataFrame(val_dict, index=[0]))
# make dict for train data
tr_dict = {
'dataset': dataset,
'epoch': row['epoch'],
'dtype': 'train'
}
for metric in metrics_list:
metrics_df.append(
pd.DataFrame(
{
**tr_dict, 'loss': metric,
'val': row['tr_%s' % metric]
},
index=[0]))
# for metric in metrics_list:
# tr_dict[metric] = row['tr_%s' % metric]
# metrics_df.append(pd.DataFrame(tr_dict, index=[0]))
return pd.concat(metrics_df, sort=True)
def test_get_session_dir(self):
hparams = {'data_dir': self.tmpdir, 'save_dir': self.tmpdir}
# ------------------------------------------------------------
# csv contained in multisession directory
# ------------------------------------------------------------
# single session from one animal
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['animal'] = 'animal1'
hparams['session'] = 'session-00'
hparams['sessions_csv'] = self.l0e0a1_csv
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'], hparams['animal'],
hparams['session'])
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
assert sess_dir == sess_dir_
assert sess_single == [self.sess_ids[i] for i in self.l0e0a1_idxs]
# multiple sessions from one animal
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['animal'] = 'animal0'
hparams['sessions_csv'] = self.l0e0a0_csv
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'], hparams['animal'],
'multisession-%02i' % self.l0e0a0_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
assert sess_dir == sess_dir_
assert sess_single == [self.sess_ids[i] for i in self.l0e0a0_idxs]
# multiple sessions from one experiment
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['sessions_csv'] = self.l0e0_csv
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'],
'multisession-%02i' % self.l0e0_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
assert sess_dir == sess_dir_
assert sess_single == [self.sess_ids[i] for i in self.l0e0_idxs]
# multiple sessions from one lab
hparams['lab'] = 'lab0'
hparams['sessions_csv'] = self.l0_csv
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], 'multisession-%02i' % self.l0_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
assert sess_dir == sess_dir_
assert sess_single == [self.sess_ids[i] for i in self.l0_idxs]
# multiple sessions from multiple labs
hparams['sessions_csv'] = self.l_csv
with pytest.raises(NotImplementedError):
utils.get_session_dir(hparams, session_source='save')
# ------------------------------------------------------------
# use 'all' in hparams instead of csv file
# ------------------------------------------------------------
hparams['sessions_csv'] = ''
# all labs
hparams['lab'] = 'all'
with pytest.raises(NotImplementedError):
utils.get_session_dir(hparams, session_source='save')
# all experiments
hparams['lab'] = 'lab0'
hparams['expt'] = 'all'
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], 'multisession-%02i' % self.l0_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
sess_single = [dict2str(d) for d in sess_single]
sess_single_ = [dict2str(self.sess_ids[i]) for i in self.l0_idxs]
assert sess_dir == sess_dir_
assert sorted(sess_single) == sorted(sess_single_)
# all animals
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['animal'] = 'all'
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'],
'multisession-%02i' % self.l0e0_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
sess_single = [dict2str(d) for d in sess_single]
sess_single_ = [dict2str(self.sess_ids[i]) for i in self.l0e0_idxs]
assert sess_dir == sess_dir_
assert sorted(sess_single) == sorted(sess_single_)
# all sessions
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['animal'] = 'animal0'
hparams['session'] = 'all'
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'], hparams['animal'],
'multisession-%02i' % self.l0e0a0_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
sess_single = [dict2str(d) for d in sess_single]
sess_single_ = [dict2str(self.sess_ids[i]) for i in self.l0e0a0_idxs]
assert sess_dir == sess_dir_
assert sorted(sess_single) == sorted(sess_single_)
# single session
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['animal'] = 'animal0'
hparams['session'] = 'session-%02i' % self.l0e0a0s0_id
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'], hparams['animal'],
hparams['session'])
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
sess_single = [dict2str(d) for d in sess_single]
sess_single_ = [dict2str(self.sess_ids[i]) for i in self.l0e0a0s0_idxs]
assert sess_dir == sess_dir_
assert sorted(sess_single) == sorted(sess_single_)
# ------------------------------------------------------------
# use 'all' to define level, then define existing multisession
# ------------------------------------------------------------
hparams['lab'] = 'lab0'
hparams['expt'] = 'expt0'
hparams['animal'] = 'animal0'
hparams['session'] = 'all'
hparams['multisession'] = 1
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'], hparams['animal'],
'multisession-%02i' % self.l0e0a0m1_id)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
sess_single = [dict2str(d) for d in sess_single]
sess_single_ = [dict2str(self.sess_ids[i]) for i in self.l0e0a0m1_idxs]
assert sess_dir == sess_dir_
assert sorted(sess_single) == sorted(sess_single_)
# TODO: return correct single session if multisession returns single
# ------------------------------------------------------------
# use 'all' to define level, no existing multisession
# ------------------------------------------------------------
hparams['lab'] = 'lab1'
hparams['expt'] = 'expt0'
hparams['animal'] = 'animal0'
hparams['session'] = 'all'
hparams['multisession'] = None
sess_dir_ = os.path.join(
hparams['save_dir'], hparams['lab'], hparams['expt'], hparams['animal'],
'multisession-%02i' % 0)
sess_dir, sess_single = utils.get_session_dir(hparams, session_source='save')
sess_single = [dict2str(d) for d in sess_single]
sess_single_ = [dict2str(self.sess_ids[i]) for i in self.l1e0a0_idxs]
assert sess_dir == sess_dir_
assert sorted(sess_single) == sorted(sess_single_)
# ------------------------------------------------------------
# other
# ------------------------------------------------------------
# bad 'session_source'
with pytest.raises(ValueError):
utils.get_session_dir(hparams, session_source='test')