def run_bel_rdf_query(network_id):
ndex = app.config.get("ndex")
dict = json.load(request.body)
search_string = dict.get("searchString")
if not search_string:
abort(401, "requires searchString parameter in POST data")
wrapped_network = get_neighborhood_as_wrapped_network(ndex, network_id, search_string)
bel_script = wrapped_network.writeBELScript()
rdf = bu.bel_script_to_rdf(bel_script)
return rdf
__author__ = 'dexter'
import ndex.client as nc
import bel_utils as bu
def get_neighborhood_as_wrapped_network(ndex, network_id, search_string):
summary = ndex.get_network_summary(network_id)
source_format = bu.get_source_format(summary)
if not source_format == "BEL":
print ("non-BEL network: network id " + network_id + " has source format " + str(source_format))
return False
ndex_network = ndex.get_neighborhood(network_id, search_string)
print str(ndex_network)
return bu.NetworkWrapper(ndex_network, ['bel'])
ndex = nc.Ndex()
search_string = "RBL2 EP300"
# Small Corpus
network_id = '55c84fa4-01b4-11e5-ac0f-000c29cb28fb'
wrapped_network = get_neighborhood_as_wrapped_network(ndex, network_id, search_string)
bel_script = wrapped_network.writeBELScript()
print bel_script
rdf = bu.bel_script_to_rdf(bel_script)
print rdf