def measure(self, measRecord, exposure):
center = measRecord.getCentroid()
local_lin_wcs = exposure.getWcs().linearizePixelToSky(center, afwGeom.arcseconds)
jacobian = local_lin_wcs.getLinear().getMatrix()
sky_pos = exposure.getWcs().pixelToSky(center)
uvref = (sky_pos.getRa().asArcseconds(), sky_pos.getDec().asArcseconds())
box = measRecord.getFootprint().getBBox()
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
bfd_wcs = bfd.WCS(jacobian, xyref=xy_pos, uvref=uvref)
factor = exposure.getMetadata().get('variance_scale')
noise = np.median(exposure.variance[box].array)/factor
image = exposure.image[box].array
psf_image = exposure.getPsf().computeKernelImage(center).array
kdata = bfd.generalImage(image, uvref, psf_image, wcs=bfd_wcs, pixel_noise=noise,
size=self.config.min_size)
conjugate = set(np.where(kdata.conjugate.flatten()==False)[0])
kgal = self.bfd.KGalaxy(self.weight, kdata.kval.flatten(), kdata.kx.flatten(), kdata.ky.flatten(),
kdata.kvar.flatten(), kdata.d2k, conjugate)
#nulled_data, dx, dy = kgal.getNulled(self.config.max_shift)
cm = CenterMoment(self.bfd.BFDConfig, kgal)
dx, failed, msg = cm.recenter(self.config.weight_sigma)
#print(dx,converge,msg)
if failed is True:
target = kgal.getTarget()
measRecord.set(self.flag, 1)
measRecord.set(self.centroid_flag, 1)
measRecord.set(self.failed_moments, np.array(target.mom.m, dtype=np.float32))
measRecord.set(self.failed_odd, np.array(target.mom.xy, dtype=np.float32))
else:
target = kgal.getShifted(dx[0], dx[1]).getTarget()
mom_even = target.mom.m
mom_odd = target.mom.xy
cov_even = target.cov.m
cov_odd = target.cov.xy
cov_even_save = []
cov_odd_save = []
for ii in range(cov_even.shape[0]):
cov_even_save.extend(cov_even[ii][ii:])
for ii in range(cov_odd.shape[0]):
cov_odd_save.extend(cov_odd[ii][ii:])
measRecord.set(self.moment, np.array(mom_even, dtype=np.float32))
measRecord.set(self.odd, np.array(mom_odd, dtype=np.float32))
measRecord.set(self.cov_even, np.array(cov_even_save, dtype=np.float32))
measRecord.set(self.cov_odd, np.array(cov_odd_save, dtype=np.float32))
measRecord.set(self.shift, np.array([dx[0], dx[1]], dtype=np.float32))
def measure(self, measRecord, exposure):
center = measRecord.getCentroid()
local_lin_wcs = exposure.getWcs().linearizePixelToSky(
center, afwGeom.arcseconds)
jacobian = local_lin_wcs.getLinear().getMatrix()
sky_pos = exposure.getWcs().pixelToSky(center)
uvref = (sky_pos.getRa().asArcseconds(),
sky_pos.getDec().asArcseconds())
box = measRecord.getFootprint().getBBox()
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
box.shift(-afwGeom.Extent2I(exposure.getXY0()))
bfd_wcs = bfd.WCS(jacobian, xyref=xy_pos, uvref=uvref)
noise = np.median(exposure.variance[box].array)
image = exposure.image[box].array
psf_image = exposure.getPsf().computeKernelImage(center).array
kdata = bfd.generalImage(image,
uvref,
psf_image,
wcs=bfd_wcs,
pixel_noise=noise)
moment_calc = bfd.MomentCalculator(kdata,
self.weight,
id=measRecord.getId())
xyshift, error, msg = moment_calc.recenter()
if error:
measRecord.set(self.flag, 1)
measRecord.set(self.centroid_flag, 1)
return
else:
covgal = moment_calc.get_covariance()
moment = moment_calc.get_moment(0, 0)
measRecord.set(self.moment, np.array(moment.even,
dtype=np.float32))
cov_even_save = []
cov_odd_save = []
for ii in range(covgal[0].shape[0]):
cov_even_save.extend(covgal[0][ii][ii:])
for ii in range(covgal[1].shape[0]):
cov_odd_save.extend(covgal[1][ii][ii:])
measRecord.set(self.cov_even,
np.array(cov_even_save, dtype=np.float32))
measRecord.set(self.cov_odd,
np.array(cov_odd_save, dtype=np.float32))
measRecord.set(self.xy, np.array(xyshift, dtype=np.float32))
def buildKGalaxy(self, record, exposures):
center = record.getCentroid()
# For wcs use the first band since a single tract should have the same wcs
band = self.config.filters[0]
local_lin_wcs = exposures[band].getWcs().linearizePixelToSky(center, afwGeom.arcseconds)
jacobian = local_lin_wcs.getLinear().getMatrix()
sky_pos = exposures[band].getWcs().pixelToSky(center)
uvref = (sky_pos.getRa().asArcseconds(), sky_pos.getDec().asArcseconds())
if self.config.footprint_size is None or self.config.footprint_size < 0:
box = record.getFootprint().getBBox()
else:
box = geom.Box2I(geom.Point2I(int(center.getX()), int(center.getY())),
geom.Extent2I(1,1))
box.grow(self.config.footprint_size//2)
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
bfd_wcs = bfd.WCS(jacobian, xyref=xy_pos, uvref=uvref)
kgals = []
for band in self.config.filters:
exposure = exposures[band]
factor = exposure.getMetadata().get('variance_scale')
exp_box = geom.Box2I(box)
exp_box.clip(exposure.getBBox())
noise = np.sqrt(np.median(exposure.variance[exp_box].array))
image = exposure.image[exp_box].array
psf_image = exposure.getPsf().computeKernelImage(center).array
kdata = bfd.generalImage(image, uvref, psf_image, wcs=bfd_wcs, pixel_noise=noise,
size=self.config.grid_size)
conjugate = set(np.where(kdata.conjugate.flatten()==False)[0])
kgal = self.bfd.KGalaxy(self.weight, kdata.kval.flatten(), kdata.kx.flatten(),
kdata.ky.flatten(), kdata.kvar.flatten(), kdata.d2k, conjugate)
kgals.append(kgal)
return kgals
def buildKGalaxy(self, record, exposures):
center = record.getCentroid()
band = self.config.filters[0]
local_lin_wcs = exposures[band].getWcs().linearizePixelToSky(
center, afwGeom.arcseconds)
jacobian = local_lin_wcs.getLinear().getMatrix()
sky_pos = exposures[band].getWcs().pixelToSky(center)
uvref = (sky_pos.getRa().asArcseconds(),
sky_pos.getDec().asArcseconds())
box = record.getFootprint().getBBox()
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
bfd_wcs = bfd.WCS(jacobian, xyref=xy_pos, uvref=uvref)
kgals = []
for band in self.config.filters:
exposure = exposures[band]
factor = exposure.getMetadata().get('variance_scale')
noise = np.sqrt(np.median(exposure.variance[box].array) / factor)
image = exposure.image[box].array
psf_image = exposure.getPsf().computeKernelImage(center).array
kdata = bfd.generalImage(image,
uvref,
psf_image,
wcs=bfd_wcs,
pixel_noise=noise,
size=self.config.grid_size)
conjugate = set(np.where(kdata.conjugate.flatten() == False)[0])
kgal = self.bfd.KGalaxy(self.weight, kdata.kval.flatten(),
kdata.kx.flatten(), kdata.ky.flatten(),
kdata.kvar.flatten(), kdata.d2k, conjugate)
kgals.append(kgal)
return kgals
(measRecord.getY() - box.getMinY()))
sky_pos = exposure.getWcs().pixelToSky(measRecord.getCentroid())
uvref = (sky_pos.getRa().asArcseconds(),
sky_pos.getDec().asArcseconds())
xref2 = ra - (jacobian2[0, 0] *
(measRecord.getX() - box.getMinX()) + jacobian2[0, 1] *
(measRecord.getY() - box.getMinY()))
yref2 = dec - (jacobian2[1, 0] *
(measRecord.getX() - box.getMinX()) + jacobian2[1, 1] *
(measRecord.getY() - box.getMinY()))
local_x = measRecord.getX() - box.getMinX()
local_y = measRecord.getY() - box.getMinY()
bfd_wcs = bfd.WCS(jacobian, xyref=(local_x, local_y), uvref=uvref)
bfd_wcs2 = bfd.WCS(jacobian2, xyref=(local_x, local_y), uvref=uvref)
noise = measRecord.get("base_Variance_value")
kdata = bfd.simpleImage(image,
uvref,
psf_image.array,
wcs=bfd_wcs,
pixel_noise=noise)
kdata2 = bfd.simpleImage(image,
uvref,
psf_image.array,
wcs=bfd_wcs2,
pixel_noise=noise)
moment_calc = bfd.MomentCalculator(kdata,
def measure(self, measRecord, exposure):
center = measRecord.getCentroid()
# currently box must be square for python based measurements
orig_box = measRecord.getFootprint().getBBox()
w, h = orig_box.getWidth(), orig_box.getHeight()
box_size = max(w, h)
if box_size % 2 == 1:
box_size += 1
box = afwGeom.Box2I(
afwGeom.Point2I(center.getX() - box_size / 2,
center.getY() - box_size / 2),
afwGeom.Extent2I(box_size, box_size))
if not exposure.getBBox().contains(box):
box_size = min(w, h)
if box_size % 2 == 1:
box_size += 1
box = afwGeom.Box2I(
afwGeom.Point2I(center.getX() - box_size / 2,
center.getY() - box_size / 2),
afwGeom.Extent2I(box_size, box_size))
if not exposure.getBBox().contains(box):
measRecord.set(self.flag, 1)
return
image = exposure.image[box].array
# PSF image must also be the same size
psf_image_base = galsim.ImageF(
exposure.getPsf().computeKernelImage(center).array)
psf_image_interp = galsim.InterpolatedImage(psf_image_base, scale=1)
psf_image = galsim.ImageF(box_size, box_size)
psf_image_interp.drawImage(psf_image, method='no_pixel')
ra = measRecord.get('coord_ra').asArcseconds()
dec = measRecord.get('coord_dec').asArcseconds()
local_lin_wcs = exposure.getWcs().linearizePixelToSky(
center, geom.arcseconds)
jacobian = local_lin_wcs.getLinear().getMatrix()
sky_pos = exposure.getWcs().pixelToSky(center)
uvref = (sky_pos.getRa().asArcseconds(),
sky_pos.getDec().asArcseconds())
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
bfd_wcs = bfd.WCS(jacobian, xyref=xy_pos, uvref=uvref)
noise = measRecord.get("base_Variance_value")
kdata = bfd.simpleImage(image,
uvref,
psf_image.array,
wcs=bfd_wcs,
pixel_noise=noise)
moment_calc = bfd.MomentCalculator(kdata,
self.weight,
id=measRecord.getId())
xyshift, error, msg = moment_calc.recenter()
if error:
measRecord.set(self.flag, 1)
measRecord.set(self.centroid_flag, 1)
return
else:
#cov_even, cov_odd = moment_calc.get_covariance()
covgal = moment_calc.get_covariance()
moment = moment_calc.get_moment(0, 0)
measRecord.set(self.moment, np.array(moment.even,
dtype=np.float32))
cov_even_save = []
cov_odd_save = []
for ii in range(covgal[0].shape[0]):
cov_even_save.extend(covgal[0][ii][ii:])
for ii in range(covgal[1].shape[0]):
cov_odd_save.extend(covgal[1][ii][ii:])
measRecord.set(self.cov_even,
np.array(cov_even_save, dtype=np.float32))
measRecord.set(self.cov_odd,
np.array(cov_odd_save, dtype=np.float32))
measRecord.set(self.xy, np.array(xyshift, dtype=np.float32))
def measure(self, measRecord, exposure):
center = measRecord.getCentroid()
psf_image = exposure.getPsf().computeKernelImage(center).array
ra = measRecord.get('coord_ra').asArcseconds()
dec = measRecord.get('coord_dec').asArcseconds()
if usingHSC:
local_lin_wcs = exposure.getWcs().linearizePixelToSky(center, afwGeom.arcseconds)
else:
local_lin_wcs = exposure.getWcs().linearizePixelToSky(center, geom.arcseconds)
jacobian = local_lin_wcs.getLinear().getMatrix()
sky_pos = exposure.getWcs().pixelToSky(center)
uvref = (sky_pos.getRa().asArcseconds(), sky_pos.getDec().asArcseconds())
if usingHSC:
box = measRecord.getFootprint().getBBox()
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
box.shift(-afwGeom.Extent2I(exposure.getXY0()))
else:
box = measRecord.getFootprint().getBBox(afwImage.PARENT)
xy_pos = (center.getX() - box.getMinX(), center.getY() - box.getMinY())
bfd_wcs = bfd.WCS(jacobian, xyref=xy_pos, uvref=uvref)
image = exposure.image[box].array
kdata = bfd.generalImage(image, uvref, psf_image, wcs=bfd_wcs, pixel_noise=1)
conjugate = set(np.where(kdata.conjugate.flatten()==False)[0])
kgal = self.bfd_config.KGalaxy(self.weight, kdata.kval.flatten(), kdata.kx.flatten(), kdata.ky.flatten(),
kdata.kvar.flatten(), kdata.d2k, conjugate);
g1 = np.random.rand()*(2*self.config.max_g) - self.config.max_g
g2 = np.random.rand()*(2*self.config.max_g) - self.config.max_g
mu = np.random.rand()*(2*self.config.max_mu) - self.config.max_mu
shift_dx = np.random.randn()*self.config.sigma_dx
shift_dy = np.random.randn()*self.config.sigma_dx
nulled_data, dx, dy = kgal.getNulled(4)
if nulled_data is None:
measRecord.set(self.flag, True)
measRecord.set(self.centroid_flag, True)
return
target = nulled_data.getTarget()
shifted_data = nulled_data.getShifted(shift_dx, shift_dy)
sheared_target = shifted_data.getShearedTarget(g1, g2, mu, False)
moment = target.mom.m
sheared_moment = sheared_target.mom.m
measRecord.set(self.moment, np.array(moment, dtype=np.float32))
measRecord.set(self.sheared_moment, np.array(sheared_moment, dtype=np.float32))
measRecord.set(self.g1, g1)
measRecord.set(self.g2, g2)
measRecord.set(self.mu, mu)
measRecord.set(self.dx, shift_dx)
measRecord.set(self.dy, shift_dy)
origin=galsim.PositionD((N / 2), (N / 2)))
wcs1 = galsim.TanWCS(affine1, sky_center)
image1 = galsim.ImageF(N, N)
psf_image1 = galsim.ImageF(N, N)
psf.drawImage(image=psf_image1, wcs=wcs1)
gal.drawImage(image=image1, wcs=wcs1)
weight = bfd.KSigmaWeight(4, 2 * scale)
uvref = (0, 0)
jacobian1 = np.array([[d11, d12], [d21, d22]])
bfd_wcs = bfd.WCS(jacobian1, xyref=(N / 2, N / 2), uvref=uvref)
noise = 1
kval, kx, ky, d2k, conjugate, kvar = simpleImage(image1.array,
uvref,
psf_image1.array,
wcs=bfd_wcs)
kshift = rshift(kval)
weight.set_k(kx, ky)
wshift = rshift(weight.w)
kdata2 = bfd.simpleImage(image1.array,
uvref,
psf_image1.array,
wcs=bfd_wcs,
pixel_noise=noise)