def test_cmsearch_from_file(self):
"""cmsearch_from_file should work as expected
"""
exp_search_res = [['a', 5, 23, 1, 19, 12.85, '-', 37],\
['b', 1, 19, 1, 19, 14.359999999999999, '-', 47]]
search_res = cmsearch_from_file(cm_file_path=self.cmfile,\
seqs=self.seqs2_unaligned,moltype=RNA)
for search, exp in zip(search_res, exp_search_res):
self.assertEqual(search[1:],exp)
def test_cmsearch_from_file_no_hits(self):
"""cmsearch_from_file should work as expected
"""
search_res = cmsearch_from_file(cm_file_path=self.cmfile,\
seqs=self.seqs1_unaligned,moltype=RNA)
self.assertEqual(search_res,[])