def upgrade(tool):
portal = tool.aq_inner.aq_parent
ut = UpgradeUtils(portal)
ver_from = ut.getInstalledVersion(product)
if ut.isOlderVersion(product, version):
logger.info("Skipping upgrade of {0}: {1} > {2}".format(
product, ver_from, version))
return True
logger.info("Upgrading {0}: {1} -> {2}".format(product, ver_from, version))
# -------- ADD YOUR STUFF HERE --------
ut.delIndexAndColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getPatient')
ut.delIndexAndColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getDoctor')
ut.addColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getPatientID')
ut.addIndexAndColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getPatientTitle',
'FieldIndex')
# In case if upgrade was already run after PR #72 got accepted
ut.delColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getPatientURL')
ut.addColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getPatientURL')
ut.addColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getClientPatientID')
ut.addIndexAndColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getDoctorTitle',
'FieldIndex')
# In case if upgrade was already run after PR #72 got accepted
ut.delColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getDoctorURL')
ut.addColumn(CATALOG_ANALYSIS_REQUEST_LISTING, 'getDoctorURL')
ut.addIndex(CATALOG_PATIENTS, 'listing_searchable_text', 'TextIndexNG3')
ut.refreshCatalogs()
logger.info("{0} upgraded to version {1}".format(product, version))
return True
def upgrade(tool):
portal = tool.aq_inner.aq_parent
ut = UpgradeUtils(portal)
ver_from = ut.getInstalledVersion(product)
if ut.isOlderVersion(product, version):
logger.info("Skipping upgrade of {0}: {1} > {2}".format(
product, ver_from, version))
return True
logger.info("Upgrading {0}: {1} -> {2}".format(product, ver_from, version))
# Required to make filtering by department in worksheets work
ut.addIndex(CATALOG_WORKSHEET_LISTING, 'getDepartmentUIDs', 'KeywordIndex')
# Required by https://github.com/senaite/senaite.core/issues/683
ut.addIndexAndColumn('bika_catalog', 'getBatchUIDs', 'KeywordIndex')
# Required by https://github.com/senaite/senaite.core/pulls/752
ut.delIndex(CATALOG_ANALYSIS_LISTING, 'getDateAnalysisPublished')
ut.refreshCatalogs()
# % Error subfield is meaningless in result ranges. Also, the system was
# calculating the %Error based on the result (not based on the range), so
# the shoulder from the left was always smaller than the shoulder from the
# right. One could argue that this could be fixed easily by using the length
# of the valid range to compute the shoulders by using the %error. Again,
# this is a weak solution, cause in some cases the scale of the range might
# be exponential, logaritmic (e.g. pH). Also, the sensitivity of the test
# may differ when the result falls in one end or another. Thus, is for the
# best interest of the labmanger to be able to set the shoulders (and
# therefore, when the warnings must show up) manually.
# See PR#694
remove_error_subfield_from_analysis_specs(portal, ut)
# Reindex ReferenceAnalysis because of Calculation and Interims fields have
# been added to Controls and Blanks. Until now, only routine analyses allowed
# Calculations and Interim fields
# Required by https://github.com/senaite/senaite.core/issues/735
reindex_reference_analysis(portal, ut)
# reload type profiles so that the fix for
# https://github.com/senaite/senaite.core/issues/590
# becomes effective
setup = portal.portal_setup
setup.runImportStepFromProfile('profile-bika.lims:default', 'typeinfo')
logger.info("{0} upgraded to version {1}".format(product, version))
return True
