def _generate_regist_command(self, item):
""" generate the registration command(s)
:param dict item: dictionary {str: str|float} with registration params
:return str|list(str): the execution commands
"""
path_dir = self._get_path_reg_dir(item)
config = load_config_args(self.params['path_config'])
config = config % {
'target-image': item[self.COL_IMAGE_REF_NII],
'source-image': item[self.COL_IMAGE_MOVE_NII]
}
cmd = self.COMMAND_REGISTER % {
'config': config,
'antsRegistration': self.exec_register,
'output': path_dir
}
return cmd
def _generate_regist_command(self, item):
""" generate the registration command
:param dict item: dictionary with registration params
:return str|list(str): the execution commands
"""
logging.debug('.. prepare DROP registration command')
config = load_config_args(self.params['path_config'])
path_im_ref, path_im_move, _, _ = self._get_paths(item)
path_dir = self._get_path_reg_dir(item)
def __cmd(p_target, p_source):
command = self.COMMAND_REGISTER % {
'dropRegistration': self.params['exec_DROP'],
'source': p_source,
'target': p_target,
'output': os.path.join(path_dir, 'output'),
'config': config,
}
return command
cmd_direct = __cmd(path_im_ref, path_im_move) + ' --ocompose'
return [cmd_direct]