コード例 #1
0
def test_package_proxy_import(bf, dataset, organization, assert_in_neo4j):
    """
    Needs to be run in non-prod, on an organization that has not been fully migrated.

    Test that multiple proxy relationships can be imported for the same proxy
    concept, and that we can import edges both too and from proxy concepts.
    """
    person = dataset.create_model(
        "Person",
        schema=[
            ModelProperty("name", data_type=str, title=True, required=True)
        ],
    )

    alice = person.create_record({"name": "Alice"})
    bob = person.create_record({"name": "Bob"})

    pkg = DataPackage("Some MRI", package_type="MRI")
    dataset.add(pkg)

    pkg.relate_to(alice, bob)

    alice_files = alice.get_files()
    bob_files = bob.get_files()

    migrate_dataset(organization_id=organization.int_id,
                    dataset_ids=[dataset.int_id])

    assert_in_neo4j()

    assert alice.get_files() == alice_files
    assert bob.get_files() == bob_files
コード例 #2
0
def test_models(dataset):
    schema = [
        ("an_integer", int, "An Integer", True),
        ("a_bool", bool),
        ("a_string", str),
        ("a_datetime", datetime.datetime),
    ]
    display_name = "A New Property"
    description = "a new description"
    values = {
        "an_integer": 100,
        "a_bool": True,
        "a_string": "fnsdlkn#$#42nlfds$3nlds$#@$23fdsnfkls",
        "a_datetime": datetime.datetime.now(),
    }

    #################################
    ## Models
    ################################

    models = dataset.models()

    new_model = dataset.create_model("New_Model_{}".format(current_ts()),
                                     "A New Model", "a new model", schema)

    assert len(dataset.models()) == len(models) + 1

    assert dataset.get_model(new_model.id) == new_model
    assert dataset.get_model(new_model.type) == new_model

    # Check that local changes get propagated
    new_model.add_property("a_new_property", str, display_name)
    new_model.description = description
    new_model.update()
    new_model = dataset.get_model(new_model.id)
    assert new_model.description == description
    assert new_model.get_property(
        "a_new_property").display_name == display_name

    new_model.add_properties([
        ("a_new_float", float),
        {
            "name": "a_new_int",
            "data_type": int
        },
        "a_new_string",
    ])
    assert new_model.get_property("a_new_float").type == float
    assert new_model.get_property("a_new_int").type == int
    assert new_model.get_property("a_new_string").type == unicode

    nc_one = new_model.create_record(values)
    nc_two = new_model.create_record({
        "an_integer": 1,
        "a_bool": False,
        "a_string": "",
        "a_datetime": datetime.datetime.now(),
    })
    nc_three = new_model.create_record({
        "an_integer": 10000,
        "a_bool": False,
        "a_string": "43132312",
        "a_datetime": datetime.datetime.now(),
    })
    nc_four = new_model.create_record({
        "an_integer": 9292,
        "a_datetime": datetime.datetime.now()
    })

    nc_delete_one = new_model.create_record({
        "an_integer":
        28,
        "a_datetime":
        datetime.datetime.now()
    })
    nc_delete_two = new_model.create_record({
        "an_integer":
        300,
        "a_datetime":
        datetime.datetime.now()
    })

    with pytest.raises(Exception):
        new_model.create_record()

    new_models_old = new_model.get_all()
    assert new_model.get_all(limit=1) == new_models_old[:1]
    assert new_model.get_all(limit=2, offset=2) == new_models_old[2:4]

    new_model.delete_records(nc_delete_one, nc_delete_two.id)
    new_models = new_model.get_all()

    assert len(new_models) == (len(new_models_old) - 2)

    assert nc_two.model == new_model
    assert nc_two.get("a_string") == ""

    nc_four.set("a_string", "hello")
    assert nc_four.get("a_string") == new_model.get(nc_four).get("a_string")

    with pytest.raises(Exception):
        nc_four.set("an_integer", datetime.datetime.now())

    assert nc_four.get("an_integer") == 9292
    nc_four.set("an_integer", 10)
    assert nc_four.get("an_integer") == 10

    nc_delete_three = new_model.create_record({
        "an_integer": 684,
        "a_string": "delete me"
    })
    assert len(new_model.get_all()) == len(new_models) + 1
    nc_delete_three.delete()
    assert len(new_model.get_all()) == len(new_models)

    # cannot add a record id column using an existing name
    with pytest.raises(ValueError):
        new_model.get_all().as_dataframe(record_id_column_name=list(
            new_model.get_all().type.schema.keys())[0])

    # assert no extra columns are added by default
    df_cs_no_rec = new_model.get_all().as_dataframe()
    assert len(df_cs_no_rec.columns) == len(
        new_model.get_all().type.schema.keys())

    # assert record id column is added when arg is present and valid
    df_cs = new_model.get_all().as_dataframe(record_id_column_name="record_id")

    # confirm that all record ids are present in this dataframe
    assert "record_id" in df_cs.columns
    for record in new_model.get_all():
        assert not df_cs.query("record_id == @record.id").empty

    #################################
    ## Relationships
    ################################

    relationships = dataset.relationships()

    new_relationship = dataset.create_relationship_type(
        "New_Relationship_{}".format(current_ts()), "a new relationship")

    assert len(dataset.relationships()) == len(relationships) + 1

    assert dataset.get_relationship(new_relationship.id) == new_relationship
    assert dataset.get_relationship(new_relationship.type) == new_relationship

    nr_one = new_relationship.relate(nc_one, nc_two)
    nr_four = new_relationship.relate(nc_four, nc_one)
    nr_five = new_relationship.relate(nc_four, nc_two)

    nr_two = nc_two.relate_to(nc_three, new_relationship)
    nr_three = nc_three.relate_to(nc_four, new_relationship)
    nr_six = nc_four.relate_to(nc_three, new_relationship)
    nr_seven = nc_four.relate_to(nc_one, relationship_type="goes_to")

    assert nr_seven[0].destination == nc_one.id
    assert nr_seven[0].source == nc_four.id
    assert nr_seven[0].type == "goes_to"
    assert len(nc_four.get_related(new_model.type)) == 5

    new_relationships = new_relationship.get_all()

    nr_delete_three = new_relationship.relate(nc_one, nc_three)

    assert len(new_relationship.get_all()) == len(new_relationships) + 1
    nr_delete_three.delete()
    assert len(new_relationship.get_all()) == len(new_relationships)

    df_rs = new_relationship.get_all().as_dataframe()

    p = DataPackage("test-csv", package_type="CSV")
    dataset.add(p)
    dataset.update()
    assert p.exists

    p.relate_to(nc_one)
    p.relate_to(nc_two)
    nc_three.relate_to(p, new_relationship)
    new_relationship.relate(nc_four, p)

    assert len(nc_four.get_related(new_model.type)) == 5
コード例 #3
0
def test_models(dataset):
    schema = [('an_integer', int, 'An Integer', True), ('a_bool', bool), ('a_string', str), ('a_datetime', datetime.datetime)]
    display_name = 'A New Property'
    description = 'a new description'
    values = {'an_integer': 100, 'a_bool': True, 'a_string': 'fnsdlkn#$#42nlfds$3nlds$#@$23fdsnfkls', 'a_datetime': datetime.datetime.now()}

    #################################
    ## Models
    ################################

    models = dataset.models()

    new_model = dataset.create_model('New_Model_{}'.format(current_ts()), 'A New Model', 'a new model', schema)

    assert len(dataset.models()) == len(models) + 1

    assert dataset.get_model(new_model.id) == new_model
    assert dataset.get_model(new_model.type) == new_model

    # Check that local changes get propagated
    new_model.add_property('a_new_property', str, display_name)
    new_model.description = description
    new_model.update()
    new_model = dataset.get_model(new_model.id)
    assert new_model.description == description
    assert new_model.get_property('a_new_property').display_name == display_name

    new_model.add_properties([('a_new_float', float), {'name': 'a_new_int', 'data_type': int}, 'a_new_string'])
    assert new_model.get_property('a_new_float').type == float
    assert new_model.get_property('a_new_int').type == int
    assert new_model.get_property('a_new_string').type == unicode

    nc_one = new_model.create_record(values)
    nc_two = new_model.create_record({'an_integer': 1, 'a_bool': False, 'a_string': '', 'a_datetime': datetime.datetime.now()})
    nc_three = new_model.create_record({'an_integer': 10000, 'a_bool': False, 'a_string': '43132312', 'a_datetime': datetime.datetime.now()})
    nc_four = new_model.create_record({'a_datetime': datetime.datetime.now()})

    nc_delete_one = new_model.create_record({'a_datetime': datetime.datetime.now()})
    nc_delete_two = new_model.create_record({'a_datetime': datetime.datetime.now()})

    with pytest.raises(Exception):
        new_model.create_record()

    new_models_old = new_model.get_all()
    assert new_model.get_all(limit=1) == new_models_old[:1]
    assert new_model.get_all(limit=2, offset=2) == new_models_old[2:4]

    new_model.delete_records(nc_delete_one, nc_delete_two.id)
    new_models = new_model.get_all()

    assert len(new_models) == (len(new_models_old) - 2)

    assert nc_two.model == new_model
    assert nc_two.get('a_string') == ''

    nc_four.set('a_string', 'hello')
    assert nc_four.get('a_string') == new_model.get(nc_four).get('a_string')

    with pytest.raises(Exception):
        nc_four.set('an_integer', datetime.datetime.now())

    assert nc_four.get('an_integer') == None
    nc_four.set('an_integer', 10)
    assert nc_four.get('an_integer') == 10

    nc_delete_three = new_model.create_record({'a_string': 'delete me'})
    assert len(new_model.get_all()) == len(new_models) + 1
    nc_delete_three.delete()
    assert len(new_model.get_all()) == len(new_models)

    # cannot add a record id column using an existing name
    with pytest.raises(ValueError):
        new_model.get_all().as_dataframe(
            record_id_column_name=list(new_model.get_all().type.schema.keys())[0]
        )

    # assert no extra columns are added by default
    df_cs_no_rec = new_model.get_all().as_dataframe()
    assert len(df_cs_no_rec.columns) == len(new_model.get_all().type.schema.keys())

    # assert record id column is added when arg is present and valid
    df_cs = new_model.get_all().as_dataframe(
        record_id_column_name='record_id'
    )

    # confirm that all record ids are present in this dataframe
    assert 'record_id' in df_cs.columns
    for record in new_model.get_all():
        assert not df_cs.query('record_id == @record.id').empty

    #################################
    ## Relationships
    ################################

    relationships = dataset.relationships()

    new_relationship = dataset.create_relationship_type('New_Relationship_{}'.format(
        current_ts()), 'a new relationship')

    assert len(dataset.relationships()) == len(relationships) + 1

    assert dataset.get_relationship(new_relationship.id) == new_relationship
    assert dataset.get_relationship(new_relationship.type) == new_relationship

    nr_one = new_relationship.relate(nc_one, nc_two)
    nr_four = new_relationship.relate(nc_four, nc_one)
    nr_five = new_relationship.relate(nc_four, nc_two)

    nr_two = nc_two.relate_to(nc_three, new_relationship)
    nr_three = nc_three.relate_to(nc_four, new_relationship)
    nr_six = nc_four.relate_to(nc_three, new_relationship)
    nr_seven = nc_four.relate_to(nc_one, relationship_type="goes_to")

    assert nr_seven[0].destination == nc_one.id
    assert nr_seven[0].source == nc_four.id
    assert nr_seven[0].type == "goes_to"
    assert len(nc_four.get_related(new_model.type)) == 5

    new_relationships = new_relationship.get_all()



    nr_delete_three = new_relationship.relate(nc_one, nc_two)
    assert len(new_relationship.get_all()) == len(new_relationships) + 1
    nr_delete_three.delete()
    assert len(new_relationship.get_all()) == len(new_relationships)

    df_rs = new_relationship.get_all().as_dataframe()

    p = DataPackage('test-csv', package_type='Tabular')
    dataset.add(p)
    dataset.update()
    assert p.exists

    p.relate_to(nc_one)
    p.relate_to(nc_two)
    nc_three.relate_to(p, new_relationship)
    new_relationship.relate(nc_four, p)

    assert len(nc_four.get_related(new_model.type)) == 5
コード例 #4
0
    nr_five = new_relationship.relate(nc_four, nc_two)

    nr_two = nc_two.relate_to(nc_three, new_relationship)
    nr_three = nc_three.relate_to(nc_four, new_relationship)
    nr_six = nc_four.relate_to(nc_three, new_relationship)

    nc_four.update()
    assert len(nc_four.get_related(new_model.type)) == 4

    new_relationships = new_relationship.get_all()

    nr_delete_three = new_relationship.relate(nc_one, nc_two)
    assert len(new_relationship.get_all()) == len(new_relationships) + 1
    nr_delete_three.delete()
    assert len(new_relationship.get_all()) == len(new_relationships)

    df_rs = new_relationship.get_all().as_dataframe()

    p = DataPackage('test-csv', package_type='Tabular')
    dataset.add(p)
    dataset.update()
    assert p.exists

    p.relate_to(nc_one)
    p.relate_to(nc_two)
    nc_three.relate_to(p, new_relationship)
    new_relationship.relate(nc_four, p)

    nc_four.update()
    assert len(nc_four.get_related(new_model.type)) == 4