def irods_import(options, irods_url, bisque_url, auth):
"""Send an irods url to a bisque server
@param irods_url: The file or container to save
@param bisque_url: The bisqiue server
@param auth : Whatever auth header are needed to chat with the bisque server
"""
if options.onefile:
# Register one file an return
url = bisque_url + '?url=' + irods_url
if options.verbose:
print "POSTING ", url
if not options.dryrun:
http.request(url, headers = auth )
return
entries = irods_handler.irods_fetch_dir(irods_url)
for irods_file in entries:
if irods_file.endswith('/'):
if options.verbose:
print "Skipping directory", irods_file
continue
if is_image (irods_file ):
url = bisque_url + '?url=' + irods_file
if options.verbose:
print "POSTING ", url
if not options.dryrun:
http.request(url, headers = auth)
def irods_import(options, irods_url, bisque_url, auth):
"""Send an irods url to a bisque server
@param irods_url: The file or container to save
@param bisque_url: The bisqiue server
@param auth : Whatever auth header are needed to chat with the bisque server
"""
if options.onefile:
# Register one file an return
url = bisque_url + '?url=' + irods_url
if options.verbose:
print "POSTING ", url
if not options.dryrun:
http.request(url, headers=auth)
return
entries = irods_handler.irods_fetch_dir(irods_url)
for irods_file in entries:
if irods_file.endswith('/'):
if options.verbose:
print "Skipping directory", irods_file
continue
if is_image(irods_file):
url = bisque_url + '?url=' + irods_file
if options.verbose:
print "POSTING ", url
if not options.dryrun:
http.request(url, headers=auth)
def main():
irods_url = DEFAULT_URL
bisque_url = None
parser = OptionParser(usage=usage)
parser.add_option('-u', '--user', help="bisque user id")
parser.add_option('-p', '--password', help="bisque user password")
parser.add_option('-l', '--list', action="store_true", default=False,
help="list contents of irods url and exit")
parser.add_option('-n', '--dryrun', action="store_true", default=False,
help="print actions but do not execute.. sets verbose")
parser.add_option('-1', '--onefile', action="store_true", default=False,
help="irods url is a single file instead of container")
parser.add_option('-v', '--verbose', action="store_true", default=False,
help="be verbose")
options, args = parser.parse_args()
if len(args)>0:
irods_url = args.pop(0)
if len(args)>0:
bisque_url = args.pop(0)
# check arguments
if not irods_url or not irods_url.startswith('irods://'):
parser.error ('must include a valid irods url i.e. %s' % DEFAULT_URL)
if options.list:
# If testing then just print the contents of the container
entries = irods_handler.irods_fetch_dir(irods_url)
print "\n".join(entries)
return
if not bisque_url:
parser.error ('must have a destination bisque server')
if not options.user or not options.password:
parser.error('Username needs to be provided for uploads')
if options.dryrun:
options.verbose = True
# setup auth
user = options.user
password = options.password
if not bisque_url.endswith(BISQUE_ADD_IMAGE):
bisque_url = urlparse.urljoin(bisque_url, BISQUE_ADD_IMAGE)
auth = {'authorization' : 'Basic '+base64.encodestring("%s:%s" % (user,password)).strip()}
# make request
if bisque_url[-1] != '/':
bisque_url += '/'
irods_import(options, irods_url, bisque_url, auth)
def main():
irods_url = DEFAULT_URL
bisque_url = None
parser = OptionParser(usage=usage)
parser.add_option('-u', '--user', help="bisque user id")
parser.add_option('-p', '--password', help="bisque user password")
parser.add_option('-l',
'--list',
action="store_true",
default=False,
help="list contents of irods url and exit")
parser.add_option('-n',
'--dryrun',
action="store_true",
default=False,
help="print actions but do not execute.. sets verbose")
parser.add_option('-1',
'--onefile',
action="store_true",
default=False,
help="irods url is a single file instead of container")
parser.add_option('-v',
'--verbose',
action="store_true",
default=False,
help="be verbose")
options, args = parser.parse_args()
if len(args) > 0:
irods_url = args.pop(0)
if len(args) > 0:
bisque_url = args.pop(0)
# check arguments
if not irods_url or not irods_url.startswith('irods://'):
parser.error('must include a valid irods url i.e. %s' % DEFAULT_URL)
if options.list:
# If testing then just print the contents of the container
entries = irods_handler.irods_fetch_dir(irods_url)
print "\n".join(entries)
return
if not bisque_url:
parser.error('must have a destination bisque server')
if not options.user or not options.password:
parser.error('Username needs to be provided for uploads')
if options.dryrun:
options.verbose = True
# setup auth
user = options.user
password = options.password
if not bisque_url.endswith(BISQUE_ADD_IMAGE):
bisque_url = urlparse.urljoin(bisque_url, BISQUE_ADD_IMAGE)
auth = {
'authorization':
'Basic ' + base64.encodestring("%s:%s" % (user, password)).strip()
}
# make request
if bisque_url[-1] != '/':
bisque_url += '/'
irods_import(options, irods_url, bisque_url, auth)
