def loadFiles(adjname, coordname):
''' create a brain object and load adjacency matrix and coordinates. Returns a brain object. '''
brain = brainObj()
brain.importAdjFile(adjname)
brain.importSpatialInfo(coordname)
return brain
def loadFiles(adjname, coordname):
''' create a brain object and load adjacency matrix and coordinates. Returns a brain object. '''
brain = brainObj()
brain.importAdjFile(adjname)
brain.importSpatialInfo(coordname)
return brain
def loadAndThreshold(adjname, coordname, threshold):
''' create a brain object using the given files, apply a threshold value
and create the networkx objects. Returns a brain object. '''
brain = brainObj()
brain.importAdjFile(adjname)
brain.importSpatialInfo(coordname)
brain.applyThreshold(tVal = threshold)
return brain
def loadAndThreshold(adjname, coordname, threshold):
''' create a brain object using the given files, apply a threshold value
and create the networkx objects. Returns a brain object. '''
brain = brainObj()
brain.importAdjFile(adjname)
brain.importSpatialInfo(coordname)
brain.applyThreshold(tVal=threshold)
return brain
def loadAndPlot(adjname, coordname, threshold, opacity = 1.0):
''' create a brain object from the given values, apply a threshold value
then plot. Returns brain, plot. '''
# make brain object
brain = brainObj()
# load date from files
brain.importAdjFile(adjname)
brain.importSpatialInfo(coordname)
# apply threshold
brain.applyThreshold(tVal = threshold)
# plot and show
plt = plotObj()
plt.plotBrain(brain, opacity=opacity)
return brain, plt
def loadAndPlot(adjname, coordname, threshold, opacity=1.0):
''' create a brain object from the given values, apply a threshold value
then plot. Returns brain, plot. '''
# make brain object
brain = brainObj()
# load date from files
brain.importAdjFile(adjname)
brain.importSpatialInfo(coordname)
# apply threshold
brain.applyThreshold(tVal=threshold)
# plot and show
plt = plotObj()
plt.plotBrain(brain, opacity=opacity)
return brain, plt