def test_get_result_paths(self):
"""Mothur._get_result_paths() should guess correct output paths"""
app = Mothur()
app._input_filename = 'test.fasta'
observed_paths = {
'distance matrix': app._derive_dist_path(),
'otu list': app._derive_list_path(),
'rank abundance': app._derive_rank_abundance_path(),
'species abundance': app._derive_species_abundance_path(),
'unique names': app._derive_names_path(),
'unique seqs': app._derive_unique_path(),
}
expected_paths = {
'distance matrix': 'test.unique.dist',
'otu list': 'test.unique.fn.list',
'rank abundance': 'test.unique.fn.rabund',
'species abundance': 'test.unique.fn.sabund',
'unique names': 'test.names',
'unique seqs': 'test.unique.fasta',
}
self.assertEqual(observed_paths, expected_paths)
