Python get_current_valuesetsの例

コード例 #1

ファイル: test_bunsen_r4.py プロジェクト: rbrush/bunsen

def test_isa_custom(spark_session, bundles):
    observations = extract_entry(spark_session, bundles, 'observation')
    observations.registerTempTable('observations')

    blood_pressure = {'blood_pressure': [('http://loinc.org', '8462-4')]}

    push_valuesets(spark_session, blood_pressure)

    results = spark_session.sql("SELECT subject.reference, " +
                                "effectiveDateTime, " +
                                "valueQuantity.value " + "FROM observations " +
                                "WHERE in_valueset(code, 'blood_pressure')")

    assert get_current_valuesets(spark_session) == blood_pressure
    assert results.count() == 14

コード例 #2

ファイル: test_bunsen_r4.py プロジェクト: datnoor/bunsen

def test_isa_snomed(spark_session):

  spark_session.sql('create database isa_snomed_ontologies')

  with_relationships(
      spark_session,
      create_hierarchies(spark_session),
      'tests/resources/SNOMED_RELATIONSHIP_SAMPLE.TXT',
      '20160901') \
    .write_to_database('isa_snomed_ontologies')

  create_value_sets(spark_session).write_to_database('isa_snomed_ontologies')

  push_valuesets(spark_session,
                 {'diabetes' : isa_snomed('73211009')},
                 database = 'isa_snomed_ontologies')

  expected = {'diabetes' : [('http://snomed.info/sct', '73211009'),
                            ('http://snomed.info/sct', '44054006')]}

  assert get_current_valuesets(spark_session) == expected

コード例 #3

ファイル: test_bunsen_r4.py プロジェクト: datnoor/bunsen

def test_isa_loinc(spark_session):

  spark_session.sql('create database isa_loinc_ontologies')

  with_loinc_hierarchy(
      spark_session,
      create_hierarchies(spark_session),
      'tests/resources/LOINC_HIERARCHY_SAMPLE.CSV',
      '2.56') \
    .write_to_database('isa_loinc_ontologies')

  create_value_sets(spark_session).write_to_database('isa_loinc_ontologies')

  push_valuesets(spark_session,
                 {'leukocytes' : isa_loinc('LP14738-6')},
                 database='isa_loinc_ontologies')

  expected = {'leukocytes' : [('http://loinc.org', '5821-4'),
                              ('http://loinc.org', 'LP14738-6'),
                              ('http://loinc.org', 'LP14419-3')]}
  assert get_current_valuesets(spark_session) == expected